GgaEX0002827 @ galGal4
Exon Skipping
Gene
ENSGALG00000002273 | LYRM1
Description
LYR motif containing 1 [Source:RefSeq peptide;Acc:NP_001155848]
Coordinates
chr14:14971507-14976954:+
Coord C1 exon
chr14:14971507-14971607
Coord A exon
chr14:14971684-14971925
Coord C2 exon
chr14:14972896-14976954
Length
242 bp
Sequences
Splice sites
3' ss Seq
ACACTCTTTGCTTTCCCCAGTAA
3' ss Score
7.42
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
TTACAGCAGAACAGGCTGGGAGTGAAGCGTCAGGAAGCTTTAGCTAAAAGCACAGAGCACCAAATTGTGCCTTTGGGTCAGCAGCTGTGCCTCTGCATTTG
Seq A exon
TAACAGGAATCACCACAGACGACAGAGAGGTGAAACGATGTCCAAGTTGCCAAGCCTCTTGCAGTGATGTGGGGGCATGTGTTAGGAATCAGATTCTGCAGTAGCTGTGGTTCTGTGCACCAAGTTCTGTGCACCAAGGTGGTGGAGGGCCTGCTCTTCCCAGAGGACAGCAGTGACCCTGCTCCTAACTGTTCTGGTCTGATGTCAGGGTACATTCAGCAACTGGAGCTCCAGGTTGGCAA
Seq C2 exon
ATGACAGCAGTCATGCGACAAGAAGTGCTGGGCCTCTACCGCAAGATATTCCGGATAGCCAAAAAATGGCAGTCAGCATCAGGACAGGCGGAAGAAACTACTGCAGAGAGGGAGTACATCATAAAGGAAGCCAAAACATTGTTCCGAAAAAATAAAGATGTAAGTGTGTGTCATTGCAGGTTTCAGTTTCTGACTCCTTTTGTTGTGCTATGCACGCTCCTGGTGGCTGGATGCCAAGGTATGAATATAAAAAATGATTTCCCAGATTTCCTTTGCCATAAATGCTGGTACAAGCACATTTTAAGGCATATTTGAGTTACAGTTTATTATTTCAGGGGTGATATTTGGTAAGAAAACTCAAACCCTCTGAGATTTCCATTAACTCCTGCACAAGGTCAGGCATGTCACCTCGATGAGCACTGCCCGTACTGCGCACTGTGCTGCTTGGTGAGTGGATCCAACCACTGCCATGACGACTCAGCCAACCTCCTGCCATCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002273-'3-4,'3-3,4-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.132
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACAGGCTGGGAGTGAAG
R:
GGAGTCAGAAACTGAAACCTGCA
Band lengths:
292-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]