GgaEX0003386 @ galGal3
Exon Skipping
Gene
ENSGALG00000002672 | SBNO2
Description
NA
Coordinates
chr28:2429377-2442828:-
Coord C1 exon
chr28:2442705-2442828
Coord A exon
chr28:2433640-2433813
Coord C2 exon
chr28:2429377-2429541
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTCTGCATGTCCAAAAAAAGCCT
3' ss Score
-0.41
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCAATATTTTAATTCCTCTCACGATTTTTATATGAATCCCATCAGCAGACCACATTTCTTGGATACAAACTATGCATCTGTGGACCCCACTGACTTCTTACCAAAAAATGGTGATTTTCCTCAG
Seq A exon
CCTTGGTGAGCTCTCTTGCTGCTGTTGCTGTCATGAATGAAGACCTTTCTCCGGTATATATTGAGAAGTTCACCTTCCTGCCTGGTCTGCGTCCTGCTCTGCCCTCAGCAAACTGAATGCTGCTTTAAAATGTCCCAAATGCAGTTCTGGCTGAAGTTCCCATCTGTCTTCAAG
Seq C2 exon
GACTCTTCATACCTCGATGAGCTCTCCAACAATAACTCTCTCTTCTCATCTCCTGCGGATTCCCTCTCTGACATTGTGGATGCAAAGGACTGCTTGCCTGCTGACAGCCTGAACCACGTGCCAACCATATGGGATGTAAACACGTCACAGCAGAACCAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672-'3-4,'3-3,5-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=0.500 C2=0.558
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCCATCAGCAGACCACA
R:
TGGTTCTGCTGTGACGTGTTT
Band lengths:
249-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]