GgaEX0003380 @ galGal3
Exon Skipping
Gene
ENSGALG00000002672 | SBNO2
Description
NA
Coordinates
chr28:2429113-2448091:-
Coord C1 exon
chr28:2448012-2448091
Coord A exon
chr28:2442705-2442828
Coord C2 exon
chr28:2429113-2429541
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCATTTCCTTACAGGCA
3' ss Score
11.68
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGTTCCATGCTGGCTGCCGACTCATGGAGCGACTGCTATCCTGCTCCTTTCCCGACCTCATCTTTCCCAAGTGAAAACCA
Seq A exon
GCAATATTTTAATTCCTCTCACGATTTTTATATGAATCCCATCAGCAGACCACATTTCTTGGATACAAACTATGCATCTGTGGACCCCACTGACTTCTTACCAAAAAATGGTGATTTTCCTCAG
Seq C2 exon
GACTCTTCATACCTCGATGAGCTCTCCAACAATAACTCTCTCTTCTCATCTCCTGCGGATTCCCTCTCTGACATTGTGGATGCAAAGGACTGCTTGCCTGCTGACAGCCTGAACCACGTGCCAACCATATGGGATGTAAACACGTCACAGCAGAACCAAACAGAGGTACGGGTGCTTCTCTCCCATCCTCCCCATCAGGCACTGAGTATCTCAGGCTTCATCCCATGGTGTTTGCCCCACGGAATTAGGAAACACAACTCCCTGCAGGGCTGAAGTTGCAATATGTTGATGTTGATACCAGGAGGCGTATCCCTGAAACATTCAGCATGTGCAGGGTGGCCTGCAACAGGAGCTTGGGAGCGCTGAAGAGACGGACTTGAGGAAAAACACTGTGACGTAGATCATTAACTGTCCCCAGCAACATCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.468 C2=0.568
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCTGCTCCTTTCCCGACC
R:
TACTCAGTGCCTGATGGGGAG
Band lengths:
252-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]