HsaEX0056334 @ hg19
Exon Skipping
Gene
ENSG00000064932 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:29158]
Coordinates
chr19:1127603-1149441:-
Coord C1 exon
chr19:1149368-1149441
Coord A exon
chr19:1147308-1147419
Coord C2 exon
chr19:1127603-1127764
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCCATCTCCCTCCAGCCC
3' ss Score
10.6
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGCGCCATGCTGCACTGCCCCTACTGGAACACCTTCTCGCTGCCGCCATACCCTGCCTTCTCCAGCGACAGCCG
Seq A exon
CCCGTTCATGAGCTCCGCCTCCTTCCTCGGCAGCCAGCCCTGCCCAGACACCAGCTATGCCCCCGTGGCCACCGCCTCCAGCTTGCCACCAAAGACCTGCGACTTTGCTCAG
Seq C2 exon
GACTCCTCCTATTTTGAGGACTTCTCCAACATCTCCATCTTCTCCTCGTCCGTGGACTCCCTGTCGGACATCGTGGACACGCCCGACTTCCTGCCGGCTGACAGCCTCAACCAGGTGTCCACCATCTGGGACGATAACCCTGCCCCCTCCACCCACGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064932-'2-8,'2-3,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACTGCCCCTACTGGAA
R:
CTTATCGTGGGTGGAGGGGG
Band lengths:
227-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)