HsaEX0056334 @ hg38
Exon Skipping
Gene
ENSG00000064932 | SBNO2
Description
strawberry notch homolog 2 [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr19:1127604-1149442:-
Coord C1 exon
chr19:1149369-1149442
Coord A exon
chr19:1147309-1147420
Coord C2 exon
chr19:1127604-1127765
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCCATCTCCCTCCAGCCC
3' ss Score
10.6
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGCGCCATGCTGCACTGCCCCTACTGGAACACCTTCTCGCTGCCGCCATACCCTGCCTTCTCCAGCGACAGCCG
Seq A exon
CCCGTTCATGAGCTCCGCCTCCTTCCTCGGCAGCCAGCCCTGCCCAGACACCAGCTATGCCCCCGTGGCCACCGCCTCCAGCTTGCCACCAAAGACCTGCGACTTTGCTCAG
Seq C2 exon
GACTCCTCCTATTTTGAGGACTTCTCCAACATCTCCATCTTCTCCTCGTCCGTGGACTCCCTGTCGGACATCGTGGACACGCCCGACTTCCTGCCGGCTGACAGCCTCAACCAGGTGTCCACCATCTGGGACGATAACCCTGCCCCCTCCACCCACGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064932-'12-10,'12-5,14-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.070 C2=0.245
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACTGCCCCTACTGGAA
R:
CTTATCGTGGGTGGAGGGGG
Band lengths:
227-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development