DreEX0007733 @ danRer10
Exon Skipping
Gene
ENSDARG00000098801 | SBNO2 (2 of 2)
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr2:57106297-57126452:-
Coord C1 exon
chr2:57126373-57126452
Coord A exon
chr2:57123129-57123216
Coord C2 exon
chr2:57106297-57106464
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTATTGAATTATCAGGCA
3' ss Score
5.32
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGTCAGCTGTATCAGCCCAACTCATGGGCGTACTCACAGCAAGCTCAATACAACCAGCACTATCCTATGCAATCTGGAAG
Seq A exon
GCAGCTCCAGCCGACCCCGTCCTTTATGAATCTGGACCTGTCTGACATAGACTTTCATGAACTTGTGCGGAATGGAGACTTTTCCCAG
Seq C2 exon
GAGCTGCCATGCACAGACGAGGTGGCATCGCTGTTCTCATCACCATCTGACTCTCTGCTGGAGTACCCAGAACCTTCAGGATTTGGCACTGATAGTCTGGCACAGTTAACTGGCGAGGGTCCTGCAGCACAGATGTACTGGGATATACCTGGACACAGTCAGAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098801-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=0.333 C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTACTCACAGCAAGCTCAA
R:
GACCCTCGCCAGTTAACTGTG
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]