BtaEX6040262 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020780 | SBNO2
Description
Bos taurus strawberry notch homolog 2 (Drosophila) (SBNO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001077911]
Coordinates
chr7:45222104-45234026:-
Coord C1 exon
chr7:45233953-45234026
Coord A exon
chr7:45233229-45233337
Coord C2 exon
chr7:45222104-45222265
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCTTCCTTTTCCTCCTGCAGCCA
3' ss Score
10.32
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GACACCATGCTGCACTACCCCTGGTGGAACAGCTTCTCGCCCACGACATACCCAGCCTTCTCCAGCGAAAGCCA
Seq A exon
CCAGTTCATGAATTCCTCCTTCATCATGGGCCAGCCCTGCACGGACCCCAGCTATGGCCCCGCGGCCACCGCCCCCAGCTTCCCGCCAAAGAGCAGTGATTTTCCTCAG
Seq C2 exon
GACTCCTCATACCTCGATGACCTCTCCAACGCTTCCATCTTCTCCTCATCCGTGGACTCCCTCTCGGACATAGCCGACACGCCTGACTTTCCGCCCGCTGACAGCCTCAGCCAGGTGCCTACCATCTGGGACGTGAGCACCGGCCCCTCCGCCCACGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020780-'4-8,'4-4,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.622 C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCATGCTGCACTACCC
R:
CTTGTCGTGGGCGGAGGG
Band lengths:
236-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]