GgaEX0003380 @ galGal4
Exon Skipping
Gene
ENSGALG00000002672 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr28:2882265-2900977:-
Coord C1 exon
chr28:2900900-2900977
Coord A exon
chr28:2895593-2895716
Coord C2 exon
chr28:2882265-2882429
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCATTTCCTTACAGGCA
3' ss Score
11.68
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTCCATGCTGGCTGCCGACTCATGGAGCGACTGCTATCCTGCTCCTTTCCCGACCTCATCTTTCCCAAGTGAAAACCA
Seq A exon
GCAATATTTTAATTCCTCTCACGATTTTTATATGAATCCCATCAGCAGACCACATTTCTTGGATACAAACTATGCATCTGTGGACCCCACTGACTTCTTACCAAAAAATGGTGATTTTCCTCAG
Seq C2 exon
GACTCTTCATACCTCGATGAGCTCTCCAACAATAACTCTCTCTTCTCATCTCCTGCGGATTCCCTCTCTGACATTGTGGATGCAAAGGACTGCTTGCCTGCTGACAGCCTGAACCACGTGCCAACCATATGGGATGTAAACACGTCACAGCAGAACCAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672_CASSETTE7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.091
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATGCTGGCTGCCGA
R:
TCTGTTTGGTTCTGCTGTGACG
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]