GgaINT0145718 @ galGal4
Intron Retention
Gene
ENSGALG00000002672 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr28:2882265-2886701:-
Coord C1 exon
chr28:2886528-2886701
Coord A exon
chr28:2882430-2886527
Coord C2 exon
chr28:2882265-2882429
Length
4098 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
GGTCATTTCTTTCATTTCAGGAC
3' ss Score
9.04
Exon sequences
Seq C1 exon
CCTTGGTGAGCTCTCTTGCTGCTGTTGCTGTCATGAATGAAGACCTTTCTCCGGTATATATTGAGAAGTTCACCTTCCTGCCTGGTCTGCGTCCTGCTCTGCCCTCAGCAAACTGAATGCTGCTTTAAAATGTCCCAAATGCAGTTCTGGCTGAAGTTCCCATCTGTCTTCAAG
Seq A exon
GTAACGCTTGGTTTTTATATTCTTTTCTCTTCCTTGGAGTTGCTGTTGTTTGTCAGGGGGGCACTTCAGCCTTTCCTCTGTGCTCGGGTGTCCCTATCTGTGCTGCAGTGGGGGGGCTTCAGGGGAGCAGGAAAGCAAAGTGCTGCAGGCAGTTCCCACTGCAGACAGCTTTGTGCAGTGCAGACCTGCGTTCCTGCACTCTGCTCCCGTTGGTGTGAGCGTGGTTACTGCAAAGCAGGGAGGAAAAGGAGCTGTGCACAGAGCTGCTCTGTGTTTCTGGAGCTGTAACAGCTTTCAGGAGTTTGATTTTTAAACCAGACGCTGCGTACAGAAATGCATGGGAAGTGCTTGCAAGGCAGAGCACAGAGCCCTTGAGACTGCGAGCTTATTGCCCTGTTTTTAGAAAGACTTCGGGTTTTGGCAGTGGAAAGATTTCCTTTGAGCGATCGATGGCTTACATTGCAGCTGTTGGTTTCCTTATTCCATCTTACCTGAAACAGCTCCGGCGTTGAGACTGCTGAGAAAACACAGCTCTCTTGCCTGGCAGTACCTCTGCATTCGTGTACGTACGTCTGTCTGTGCATATGTGGGGCTTTTCTGCAGTCCCTGCAGCGTGCAGTGCCAAAGGGACGTTTGTTTCCTCTGCGTCTGGGTTGTGAGCAAGTAAATCATTTATATACCGACGTCTTCGTGGCTACACTTATTTTTAGGACATATGCTGCTTCTGGATTTAGGCTTCACCTGCTCGTTCAGTATTTTTAACAAAGACTTTGCTTTGGCCAAAGGAGCTGTGGGTTGGGAGAAGGAGGTCAATGGCTGCATTGTTTTCTTACCCTGCTTTTCTCTGGTCTTTTTTGGGAGTTTGTTCTTGGCTTCTCACAGCCCTGGGTTGGGATGATGATAGAAACGTTGTGTGCCGGAGTAGATCCCTTTGTGCTCAGTTTCAAAGTCCAGCATGTGAGTGCTATCATTGATTTATCAAGCTGCTCACTAGAGCATCTTCTGATACTGAGATCAGACGGTGCTTTCTGTTCGTCTATCTCCCATGCTGGTACATTGATCTTATTTGATCTTCAGTGTGAAAAACGCTGCCAAGACCAATGCCCAGCAGCTGTATCTCTGTGTTGGCCACTCTTAAGCCTTATAAAACTCTCCATTGAGTGCTCACCCTGCTGTCAGGGAATCGTCCTTTCCCTGTTTTATGATGCACCTCTGTTTGCTCCATCCCTGACACAAGCAGTTCCTTCTGAGCTGTTTTCACAAGTGTAGATATCAGAGCCTCCATGCCTGTTTTCCTCTAACTGCTGTAAAATTCTCCTATTCCCATTGAGAGAAGCACAAAGTTCTTACTGATCAGTCCTAAACAGGGACAAAATAATTCCCTCAGAATGCAGTAATCCGTCCTCTGTGGGCTCTTGGGCCCCTGTTCTCCCCATAACCACCTCCTCTGGTTTTTGGTGCTGGTGGCACTATCCCAATTGGTGCTGCTCCATCTGCTGCTGGATCAGTGCATGGTTCTTCCTCTGTTTCGGGGCCTGGAGGTTTAGATGACTGCTGCATATAAACTACTGGAGTAATTAGTCAAAGCGTGGTTGATAATGATACGTATTGTAGTTATCGGTACGGCTTTATATTAAATAATTACAGAGCATTCTGTATTTACACGGTGTGGTTTGCTGGGGCTGCGCTGTAAGCTCTCAGGACAGGGATGCAGCATGCTGTGGGTGTCTGTGCTCTTTGGCTAGCGCAGCTAGGTAAGGCAGACAGGGGGCTTTGTGACTAATGCCTTGTAATGCTGCGAGAGGATGGACCAACTGAAGTCATTTCCAGAACTGATACTGTTCATTCTCCCTCTGATTTGAGGGCTGATTTCCTCTTCCTTATTTAAGGGAGCGGTGGCTGTGGGGCTCACGCTGGGCAGGCAGTGAGCTGGTTGGGCTTCTGCACACCCCTTACTGTTCCAGCTGGGCACCTTCCTCTTTTCAAGACCCTAACAGGCAGTGAAGTGAATGGAAAAAAAACTAAATAAGTGAATCTTACGCATATGATGTGTGTGGTGCTCTTGGTGAGAGGCTGAGGGTTGCCTGGGGAGGCACCTGTGGCTTTAGAGCAGCTGCTGTCTTCTCCAGGGCCGAGCGGGACATGGCTGGCAAGATGGGGAAGGGAACGTCCTGTTGGTTGTAAGTGCTGCAAAAAGACAACTTCTGATAGCAGCCGGGAGGGAGCCTGGCCCAGCTCTTGGCCAGGAGCCCATAGGAATAATACAGGCAGGCTCAGCTGTTCCTGGTTTTGTCAGGCGGGGCGAAGTGACTTTTAAAATTGTTGGCTGCCTTTCTGCTTTGTAGTACAGAATTGGCCTTTAACTGGAAATGAGCAGTGATTTCTCCTCCTGTCTGACACTGCGGCTCTCCTGGCAGCCGTGCTGCATTATCATCACACTGATTTTGTTATCTGACGTAGCACGGAGCTTGAGCCAGCCATGTGCTGGCAGTCCCAACCCCTGGGAAGAGCTGCAGGGCTGGTGTGTGTTGGCAGAACACAGTGGGCTGGGAGGAAGGACCGGTGGGTCTGTCCATGCGTCCCTCTGGGGTGCAGCCACATCCCCAGCAAGGGACTTTGTGCTCTGATGTGGTGCTTCAAAGACAGGCCTTTCTGCCAGCTGAAGTAGTATCTCATAGAATCATTGAATCGTAGAATCACATAGGTTGAAAGGGACCTGAAAGATCATGTAGTTCAACCCCCCTGCCATGGCAGGGTTGCTATCCACTAGGTCAGGCTGCCCAGGATCCCAACCAGCCTGGCCTTGAGTGCCTCCAGAGATGGGGCATCCACAGCTTCTATAACCATCCAACCAATTCCTCATCCACTGAATAGTCCACCCTTCAAATCTGCATCTCTCCAATTCAGAGATAAGGATGTGGTGGGGGTCCATGTCTAAGCCCTTGCACAGGTCCAGGTAGATGACATCAGGTGCCCTTTCTTTGGCCACTGATGCCATCATTCCATCACAGGAAGCCACCAGATGAGTCAGGCACGACCTTCCCTTGCTGAAGCTGTGCTGGCTGGCTCAGATCACCTCCACATTTTGCATGTGCCTTAACATGCCTTCCAGGAGGATCCGTTCCATGATCTTCCCAAGCACAGAGGTGAGGCTCACCAGCCTGGAGTTCCCTGGGTCCTCCTTCCTCCCTTTCTTGAATGTGTTTCCCTTTTTCCAGTCACCAGGGCTTTGCCTGACAGCCACTAGCGTGGATAAGAGCTGGGGTGGTGCAGTGATCTGCACCAGAGCTGCAGATAGGTTTTTGGCTATCAGTTCTGGTCGCTTGGCATTTGAATAACCGAATAAGGAATTAATGATTGGTCACTTTGTGATCTGGAGTCCGCATGACTCAAACTGACATCATTACTGGGTCAGCACAAAATAGAACAAGTGTAAGCCATCGTGGTACTAGCACCAGAAAATGAGCAAGGGCAGAGCCTGATCCTCGTCACCGAAGCACGTTCACTTCTTGCCCAGGTCGAGGCATGTCCCAGGAAGAGTGGATTTGCTGCAGTTCATCTGTGTGCAGATCCAGGTGTCCCCACTCCAGGCAGCCTGCTTTGTACAGAACCTCCCATCAGGGGCTGTCATTTTTTCCGAAGCCTCTGGGTAGTGCTGTGTTATGAGTTGCAATTAAACAGCTCTGTCATTATGGGCTCTAGCTGGTTCTCTGTTGGATGGTTGGAACACTTGAGTCTTTCATGGGTCAAACTGAAAAGTTTTCACCCCCCAGGGGCCAATCTAATCAAACCCAGAAGTGGTGTCTGACGCCTTGGTGAATACTCTGTGTGTGCAGGTGTGCCCAGTCTGAGTCTTGAACGTTTACCAACACTGCTGCCCAATCAGTGCTTCCTCCTCTATCAAGAAACCACATTTTTAAACCAGCTGCTAAGAGCATGTCATCATTGACAGGTTAATTTCTGAGTCTGTGGAGCACAAAGCAACTCACTGCTTGGTTAACAGCAAAAAATTAAAGCTTCCTGGATGAGCAGACGTGAGAAGGGAGCTCTCTGCTCCTCTCCCACCTCCTCTAACTGTGGTCATTTCTTTCATTTCAG
Seq C2 exon
GACTCTTCATACCTCGATGAGCTCTCCAACAATAACTCTCTCTTCTCATCTCCTGCGGATTCCCTCTCTGACATTGTGGATGCAAAGGACTGCTTGCCTGCTGACAGCCTGAACCACGTGCCAACCATATGGGATGTAAACACGTCACAGCAGAACCAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672:ENSGALT00000004211:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]