RnoINT0131013 @ rn6
Intron Retention
Gene
ENSRNOG00000013987 | Sbno2
Description
strawberry notch homolog 2 [Source:RGD Symbol;Acc:1307194]
Coordinates
chr7:12493573-12501803:+
Coord C1 exon
chr7:12493573-12493741
Coord A exon
chr7:12493742-12501641
Coord C2 exon
chr7:12501642-12501803
Length
7900 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CACCACTGTCTGTCTCCTAGGAT
3' ss Score
9.22
Exon sequences
Seq C1 exon
CTAGCCCCAGCCCTCGACCTCCTGCTTCTCCGAGGACAGGGCCCGTGCACTCCTGGTCTGCCCTCCATCTCTGGTGGCATGGAACCCCTTCCCATGGGCTCTGATGGCCCTGCTTGGTGACCAGAACAGCTTCACAGTCCCCTGTGGGATACCCACCCTGGGCGTGCAG
Seq A exon
GTGCGTGGCTACCCGACACCTGCTTTTGTCTCCATTGTTGAGTTTTTAGTTGAGACATCATGTGACTCCCAAGCCACCATGTCGCCATCCCATGACCTCCATCTCTCCCTCCTCAGTCCCCAGCACCCAGACTCCTTCCCTGTCTCTGGAGTCTGCTCCGGACAGTTCAGTTTTGGAGCCCCACACAGTGTGCTCTTTGTGTCTGGGTCTCTCACAAGGTCCCCTACACTGTGGCCTGTGTCTCTACCTCTCGTCCTGAGTAACATCCAAGTGTGTGCCGTCCACTCATCTTCTGCAGAGCTTGCTTGCCCACTGACCGTCATGGAGGGCAAGAGTTTCCGTGGGGACTTGTCCCTGTGGCTCTTGAGTGCACACCCAGGAGTGGAAGTGGGCGGAGGTACAGCTGTAAACTTTTAGTGACAGCTTTTGTGTACTGGGTATGTGTGTAGGGGGCGTTGGTTCTTACCCCAGGAGGGCAGGTACAGCACACCTGGGGCAAAGCCTGTGTCCAACGAGAGGGATGCTGGAGGCCTGTGGGAAGGACCTGCCACCTAGGGCCATCTCTTCTGCATTCTCCTCAGGCTTCTCCTGGGCTGTCCCTTCCTGGAATGTCCCGGGTGTCCTCAGTGTTCCCGGGGCTCACCCAAGCCCTGCACCTTCCCTGAGGCTCCCTGTATAGATAGATACAGAGCCATTCAGACCCCACATTCCTGGCCATGGTCCTGTGTCTCTTTACCCAGCCCCTGTACAGGGAGGGCAGCCTCCAGGAGCCCAGGGCGCACAGGTGGGCCTGTGCCCCAGGCCCTCTACTTCCCTCCAAGGCCATGTGTCCCGTAACATGCTCACTGGGCCGGCTTCTGGGAAACCAGATGAGCTCACGCTCAGGAAGGAGCGATGCCGCCTCCCACCTCCCACCTCCCACCCAGTGGCCGCATCGACTACTCCAACTTCAGACTCCGCAAATGCTAGTCAGGATCAGAGGTCTGGCCACTGCTGCCCAACAGTTTACCGGCATCAGGAAAGGGGAGCCAGAGAGGGCGCTAGCTTACAGGAAGCCACATCGGCGGCAGCTGCTGCTGCTGCAAGTAGAGGTGGGCAGTGGGACCCTGCACACGGAACTCCGTACACACTGTGGCCCAGGCCTCTCTTTTGGAGAGGTAGGAGTGGGCAGGGTGGTGGGGACTGAGGCCAAAACCATTAAAAACCAGTCTCTCCCAACCGGCGAGCCTGGTGGCCCAGGCAGTCTGCACAGTGCCTCCGGGCCACTCCCACCATCCCAGGCTCCTATGTACCGTACCCCTGAGCCTGCCTCCAGCCTTCTGTGTCACCCCTCCTCCTGTGTCTGTCCCTCAATCTCATAGGGACAGCCATTACTACAATTGGGTAAAAGCTCACCCTCATGCTGTGGGACCTCACAGTAGCTCAGTATTTCTACAGTGACTATGCTTTTAGGAGCTGGGGCCAGACATAAGCTATCTTAACAGGACATTTTACTTGTTTATTTATTTATTTACATATACATTTTTTTTTGAGATGGGATCTCATGCAGTGCAGGCTAGCCCTGAACTTGTTATATATCTGAGAATGTCCTTGAACTCCTGATCCTCCCTCCTCTGCCTTGCTGGTTTATGTAGTGTCTGGGATAAAACCCCAGGCTCTGTGCGTGATGAGAACACTGCCCAGCAAGCCCAGCTCCTGTATTATCTCTGTTTGTTTTGTTTTGTGTTGAGACAGGGTCTCTCTCTACGTAGCCCTGACTGTCCTGGGACTCATTATTTAGACCGAGTTGGCCTTGAACTCACACTGATCTGCCTCCTAAGTGCTGAGACTAAAGACATGTGCTACTAGGCCTGGGTTATTTCATTTTTCTTTTTTCTTTTTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTCATTTTTCTTAAAACAAAAGTCTCATTATGTAGCCCAGGCTGGCCTTGACCTGGTGACAGGCTCCTGCCTCAGCCTCCAGAGTCACAGGAGCCACTCTGTCGCTTTAGCTGTTGGGATGACCTGCCAGATGCCTGCACCCATCCAGGCCAGCCCTGCCTTTGTGCTCTGGAGCCCCTCATGTTAGGCTAGCAGCCCTCCCTCCCTGCCCTGCTCTGTCCCCTCACTGTGGTATAGAGAGGCCTCTGCTATTCCCAGCCTGGCCACATAGCCCTGTACCAAGTGGACAGGAAGATGGGAGTCAAGACAGAACTGATACAGTGGGGAATTAGACCCAAGCTCTGATGGTTCAGGCTGTCCCTGTAAGGGACATCCACCCCTTCTGCCTCTGCCAGATCCAAAGACCAGCTGTGCCCACAATCCCTCCCATGACTCTCGCCCCTGGCTGCCATCAGCCACATGAGCAGATGTGCTTTAGCTTGGCCCTGTCTGTCATCAGGATCAGCACAGGTCACACAGATGACTCTTCTGCTGAAGTCCTCAGGTCCCTCTTTCCCATGTTCCTAGCTCTCCCTCACCCCAGGCTAATTGGTCCCAGCCCTCTGAGCTTGTGTCTTGTGTCCCCTTGGCCCCTAGATCGCCTTTGCCTGATAGCCCACATGCCTGGCCTCCAGGGGCTGTGAGGGGCAGAGTGTCCCCACATCCATGACTGGAGACCCTCTCCTGCCATTCCTGAGTGTACCTCCTCATGCCCACCTGACTCTGACCCCTGGGAGCACCTCAGCCCTCCCTGTACCTCACAGTTGCGGTAATTTGGGGACTTGAGTTTTTCATGTTGGCTCCATCCATCCCTGTATACCCCCAGTGCCTAAGACAGGGTTTCTCTGTAGCCCTGGCTGTCCTGAAACTTACTCTGCAGACCAGGCTGGCCTCTGCCTCCTGAGTCTTGGGATTAAAGTCATGTGCCACCAGCACGGGACCTTCAGTTCTTAGACTTGAGACAGCTGTAAAGATTGTCCCTTCAAAGTACATTCAGCACCCACGGGAGAATCAGGAGTAGAGATTAGCCCTGGCTGCACAGACTGTAGACCCAGACAGCCCTCACCTCTGTCCAGTTCTAGAACATTCTGTCTCCTCCAAGGGAGGCACATCCCCATGGCAGATTATTCCATGTCATTTGGAGCCCCAGACCCTGTGTGCACTGTGTCTGGCTGTCTCTGAGCAGTGTGTCCTCTATGTCCCTCCATGCTGTGTCATGCTGGAGCCATGGCATGTCCACAGCCATGTCTCTCTTGTTCATGGCTGTGGGATACTCCTGCCTGTGGGCACTGGGGGACACTGGATGACCCCACTTTTGGTACTGAGATTCACTGCTGTGGTGCTCCTGGTTTTTCTACGGCTATTTTGGAAAGCAGTTGTCAAGTCGTGGAAGCCAGCGCTTTGTTGTCCGAGGCACTCGGTGCCTGCTTCCCCAGAGGCCGCTCTCCACAGCCTTGCCACAGTTGCTACTGCTGGCTTCGGGGTCACGCTGTCCTTGGTGGTATCCCGCTCTGATATTTGTCTTTCTTTCCTTTTTTTAAAAAAGATTTATTTATTCTATATAAGTACACTGTAGCTATCCTCAGACACACCAGAAGAGGTCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCCCTTAACCGCTGAGCCACCTCTCCAGAACTCCTGCTCTGAGTTTTGATTTGAGTTTATTGAGATAGGGTTTTGCAGTGTAGCCCAGGCTGTTCTCACAGTCCTCCTGCCTCAGACTGTCAAGGGCTGTGTCAACAAGGATGCACCACAATGAGTGGCTTCGCTGTGCTGATTGGAATTGAGGCTTTGCTCAGTGCCTGTGCCTGGATAGGGACAGGATGTTGCCAGGGTGAATGAGGGCAGTTCCAGCTGCTGTTTCTGGGGCCTTTGTCCTGGGTGGCTGAGGATGTGAGAGCCTAGTAGAACCCTGCAGCGCTGCTGTCCTGACAGGATGGCCGGGGATCTTCATTGATGGATGGGATCCTGCTGGCTTGGGCTCCTCAGCCTCCTGCCCATGAGTACTGATATAGGATGGCCTTCTTTGTGGGACACCTCATCCCCAACAGGAGAGGCCATGTCCCCAGAGACAGCCACAACTGTGGCCCTGTGCTGCATCCCTGCCTGCCTATAGTGGAAGTGTCTTCTCCTATGTCTTGTGGCCCTAGGCTCTCCCCAGCAGCTCAACTTATTGGAGGATACCAGGGGTGAGCGGTGGGCCCTGGTGTGAGGACTCTGGAGGATGCACTTTGATGAAGGACTGGCGGCCCAGCTCAGCTGGAGGGAGGAGTAGAAGGGTACCCAGGCCTCAGTTCCCCTGGCCCAGCTTCTCAGTTTTGCCTGCAGCCCCTGATCCCTGACTTCCCTGGGGTGGGGTGGGGGGAGTAGGGGGCTGGTGCACAGAACAGCCCGTGCGTCAGTAGTCCCAGGGAAACTGAAGCTTTCTCTTCTTCCCCATGGGATGGCCCAGAGAAGTGGGGTCAGGCCAGGCTCTGAGCCCGGCAGGGTGCGCGTTGTTGACAGCCCTTCTGGGCTGATCCGCCCCCTACAGTAATTCTCCGTGCTCTGCCAGTAACTGCCCTGACTTACCAGGCGGCATCATTTCCTGAAACCCAGCCCAGCCTTAGGGGAAGTCGGGAGGGAGCCGGTGACTAACCCTCATGCAAATGGGGCCAGCAAGATTGCTGCTGCCTCTGTCCCCCACGGAGCCGCTAAGCCTGCGGCTACCGTGGTCATGAGGCTGGTGCTCCCCGGCAGCTCTAACTGGGGGACACGGCGGCCACCGCTCAGCGCCCCGCACCCCGACCATGTCACAGCTGCGCTTCTGGCTGCAGTTCGCCGCGCTCAACAAGGTAACCGGCAGGGACCAGCAGGGCCACCCAGAGCCACCTGTGGCGCCCCTGAGCTTCCACAGGTGGCAGAGCTGTGGCTGGGACGCCCCCAGCCCTGCCCACTCTGTACTTTTCTTATCAAGTCACAGTGAACTTGCCAGAATTTTTTAAGCCAGAGATTTGAGACTCAGCATAGTGGCATGAGGATGGCTGTGGGAGGGAGCCTCAGTGTGCAGGTGGCCAGAGCTGTTCCAGCTCCCTGTGCTGGGGAAGGGATGGGTTGGGTTGTCCTCAGTCCAGGTGGGACTATTGGCAACACCTCTGCCTGGGCTAGGGCAGGACTCAGTCTTAGCGAGGTCTAATGGGTTGGGTGAGGCAGGAGCGCATCTTTCCTCTGGGTTTTCAGTCCAGAAGGGGTGGAGGGTGTCTGCATTTCTGTGCCTTTCTTCTGGGTTTGTCTTCTGGGATTGGGAGATGTCTGCTGTATGACCTGGGACAATGGAGGGCTAGTCCCTGCCGGTTCCCTCCCACCTAGCAGAGCTGTCTGAAATGCTCACAGAGTAACCACAGTGGGGACCCTCCCAACCTCACTGTGTGCCATCCAGTGTGCCCATGCTCTCGCTAGAGACCCAGCCAGAAGGAGCTACAGGGGATAGACCTACCCTAGAGGGGCCTCACTGGGACCCATCCTCAGAGCATCCCACAGGGGCAGCCCAGGGCACAGGGTCCAGGCACCTAGCCTTCCCACACAGGTAGGTACCTCACCAGTGTGGGTCTGTGTGCATGAGCTAGTGACAACTGAGTTGTCCTGGGGCGCTGAGTGAGCCAAGCACAGGGCCAGGCCTGGGCACTCCAGAAGCCCTGTGCCCCAGCGTCCATGGGTGGCTAGGCTGTTGGGAGGTGGTGCCAGGAAGTTTGTCCCTACTGGCCTGGTTGGTAAAACTTTTAGACTACAATTGAAGGCTCCAGGCGTGGTGCTTGCCTGCCACCCCAGTACTAAAGGTGGAGGTAGGAGGATAAGGGTTCAAGGTCAGCCAAAGCAATGCGAGACTATCTCACCATGTAATCCTCAGGGCCCTCACTTCCTGTCCCTATGTCATGCCCATCACACCGAGTGAGGGGCTTTCCACTGACACATGGTACCTTCAACCATAGTGGCCTGTTTCCAGTGCCTCAGTTTCCCCTCATTTCTTTTCTCTGTCTATGACCCCTTAGGACATCAGGCTGCCTCCCTGGGCCAGCCTTAACTGACATTGTCCCATCTTGGACTGAAGCCACTGTAGGAGTCACTGGGTTTGCCTCCCCCAGCCACAGCTGTGGAGACCATCACTCACAGTTTAGAGCCATTGTGAGAGGGTGCTGGGCCTATTGCTGGGCCCTGGGGAGCCCTGAGACATGCGATCCCTGTATCCCAGGACTTCACAACTCCTCTGCTTCCTGGTCCAGCACTGGGTTCTCTTGGGATTTTCTCACTATGTTGGAGAACAAGGATCACAGAGCTGTCCTATGCTGCCAGAGTCTAGACTGGGTTCTGTGCTGGGGATGGCACAGGCTGGGACTGTCCAAGTCTACTCCTAGCATACAATGGAGAAATTGGTCTCAAAAACTTACCATCCCCTATCCTGCCCCCTGAATGCAGGCTGTCACCTCTGCAGTGGGGTCATAGTGCCCTGTGAGGTGGGGATTCAGAAACATATCCCCAGACCAGGGTCATTCAGGGGTCCCTAGGAAGTCACTAGGTACCCAGCCAGTTGTCTTCCCTTCTCTGGGTAAGACCAGATGGCCCTGGACACACTAACCCTCGGAGAAGGCGGCCAGTTCCCCAGGACCCTCCTCAGGACCAAGGAGACTTTTGAGTCTAAGGACATAAGCCTTAGAGATCAGCCTCACACCGGGCTGGGTAGGCTGAGGGCCACCATACTCAGGGGTCTTCTGTCCCTTCTGACCCTGAAGCCTTGAAACCCTGTTGCCTCATCACTTAGCCCTATCTCCTGGGACAGAGCAGGAGACGTGTACCCTTGGTTACCCAGGTTCAGGGACAGCCCTTCACTCAGCACAGCCCTGTCCTCCCTAGCTGCTAGTCACCCATTCTCCAAAGACGTCTCACAGCTAGAGCTTGGATTGTCTATTGTGTACCCTTGAGTGCTCACTGTCAAGGCGAGGGGACAGACAGGATGCATAAAGGAACAAGCCACAGATTACTGCCGGCTCTAGTTGTAGCCCTAGAGGCCCTCCTGGCCTCCCGCCCTGCCAAGGAAATGTTACCCGGTGCTTCCGAGGCAGATGTCAGCTGGACCCTCTAATTATCTGATACTGGGCTATGCTGGGGCTACTGGCTGGTGTGGAACACAGGCTCAATGAGGCAGGGTGATCCTGCCCGGCCCAGGTCCTCAGGGTCATCACCCTGGCCTCCAGTCCTTTTTGTGGTGGGGGTGGAATGTCAAACTCCCAGCCTACAGGATGCTCACTCTCAGGGTCTCTGGGTGGAGACAGGACTCCTGTCATCTTGGAACTTGGGGGTGGGAGGGGCTGAGGGTGAAGAATTGCCCTGAGTCTGAGGCCAGCCTGGGCTACAGAGTAAACAAACATTGTTACTCAGTTTCATCCATAATCCATATAGTTTACTCATTTAAGCTGTACATTTCTGCTGTTTTAATGTAGTCATGGCTGTGTATTTATGACTTTTAGAACATTCCATCCCATCAAAGAGAACCCCATCCCCACTGGCCATCACCACCCTTACCCAGCTCTGGAAACCCTGAACCACTTGCCATCACTGTGTTCTCCTAGTCTGGACATTTTCTGTTATGGAGTCCCCATTGTGTGGCCTTGTATGTCTTGCTCTCACTGAGACCGTGTCCTCATGGTCACTCCATGCTGTGGTGTATGGGGTCTTCACTCGTCTTCCTGGCTGTGTGACACTCGGAATACATTGTTGCTTGCCTGGACATGTGAGTGCACACACAGCTAGCCACTGTGTCACCACTGTCTGTCTCCTAG
Seq C2 exon
GATCCTTCATGCCTCGAGGACCTCTCCAATGCCTCTGTCTTCTCCTCGTCTGTGGATTCCCTGTCAGATATCCCAGACACACCCGACTTCCTGCCGGCCGACAGCCTCAACGAGGTGCCTACCATCTGGGATGTCAGCACCACCTCCACCACCCGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013987:ENSRNOT00000068197:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]