MmuEX6049740 @ mm10
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80072357-80084314:-
Coord C1 exon
chr10:80084241-80084314
Coord A exon
chr10:80082615-80082726
Coord C2 exon
chr10:80072357-80072518
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATCCTTACTTCTTTTTGCAGACA
3' ss Score
9.2
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AACCGACTCCTGCACTGTCCTTGGTGGGGCAGTTTCTCACCGTCTTTGTACCCCACCTTCTCCAGTGAAAACCA
Seq A exon
ACAGTTCGTGGGTTCCACCCCATTCCTTGGTGGCCAGTCTTGCCCTGAAACCAGCTACCCCACCACAGCCACCGTCCCCAGCTTCTTCTCCAAGAGCAGCGACTTTCCTCAG
Seq C2 exon
GACCCCTCATGCCTCGAGGACCTCTCCAATGCCTCTGTCTTCTCTTCATCTGTGGATTCCCTGTCAGACATCCCAGACACACCTGACTTCCTGCAGGCTGACAGCCTCAACGAGGTGCCTACCATCTGGGATGTCAGCACCACCTCAACTACCCATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673-'17-29,'17-14,18-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.276 C2=0.356
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGACTCCTGCACTGTCC
R:
TGTCATGGGTAGTTGAGGTGGT
Band lengths:
234-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types