GgaEX0003812 @ galGal4
Exon Skipping
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6979981-6984332:+
Coord C1 exon
chr17:6979981-6980362
Coord A exon
chr17:6983979-6984034
Coord C2 exon
chr17:6984229-6984332
Length
56 bp
Sequences
Splice sites
3' ss Seq
CCCATTCTCTCTATTTCTAGACA
3' ss Score
9.5
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATCCAAACGTAACCAGGTCTACTTACCAGACAGACCCTGATGACAGAGACTTCGACCCCACGTTCACCTCCAGGGAATTCCTTTCGGAGAATGCCATCACGGACAAGCTGTTGGACAAGGCCTCTGACTCGAAGGAGTTGGTGCTCAACATGACCATGAACAGCATCTTTGCCCAGGGAGACCCAATCAACTCTGTGGGGTCCCACATCGACAGCCTCTACGTTGACTACGAGGACAGTGATGGCATTGTGACCTATACTATCAATGGCACCTACATGGAGCTGAGCAACAGCAAAGCCATCAATTCATCTGCAGAGACACCATTTTCAAATGCCACTGTCACCATGACCAGCTCTCAAGGGAACAGAACCCACAAAGCAAG
Seq A exon
ACAGTGGAAGCTCTGCCTCTAACCGGGCTGGGGATTCTACTTGGGGCTCAGGACAG
Seq C2 exon
AAACAGATTGAAGTTGTTAAGAAAGGGCCAAGGTGTGAGTGCTGCTGACATGTACAGGTGGAAGCTTTCCTCCCATGAACCCTGCAGCTCTACATGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955_MULTIEX2-1/2=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.310 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000004669fB422
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTCACCATGACCAGCTC
R:
CAGGGTTCATGGGAGGAAAGC
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]