GgaEX0003812 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:7653075-7658742:+
Coord C1 exon
chr17:7653075-7653456
Coord A exon
chr17:7657072-7657127
Coord C2 exon
chr17:7658619-7658742
Length
56 bp
Sequences
Splice sites
3' ss Seq
CCCATTCTCTCTATTTCTAGACA
3' ss Score
9.5
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATCCAAACGTAACCAGGTCTACTTACCAGACAGACCCTGATGACAGAGACTTCGACCCCACGTTCACCTCCAGGGAATTCCTTTCGGAGAATGCCATCACGGACAAGCTGTTGGACAAGACCTCTGACTCGAAGGAGTTGGTGCTCAACATGACCATGAACAGCATCTTTGCCCAGGGAGACCCAATCAACTCTGTGGGGTCCCACATCGACAGCCTCTACGTTGACTACGAGGACAGTGATGGCATTGTGACCTATACTATCAATGGCACCTACATGGAGCTGAGCAACAGCAAAGCTGTCAATTCATCTGCAGAGACACCGTTTTCAAATGCCACTGTCACCATGACCAGCTCTCAAGGGAACAGAACCCACAAAGCAAG
Seq A exon
ACAGTGGAAGCTCTGCCTCTAACCGGGCTGGGGATTCTACTTGGGGCTCAGGACAG
Seq C2 exon
TGATGTCCACGTATGCTATGTGCGTCCGCTATGATGGGATCGAAGTGGACGATACGTACTGTGATGCCATGACCCGTCCTGAGCCCGTCCATGAGTTCTGTGCTGGGAGAGAGTGCCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.354 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGCTCTCAAGGGAACA
R:
CCCAGCACAGAACTCATGGAC
Band lengths:
144-200
Functional annotations
There are 0 annotated functions for this event