GgaINT0126468 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7653075-7657425:+
Coord C1 exon
chr17:7653075-7653456
Coord A exon
chr17:7653457-7657321
Coord C2 exon
chr17:7657322-7657425
Length
3865 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTTTTTGTGCTTGTTGCTAGAAA
3' ss Score
6.66
Exon sequences
Seq C1 exon
ATCCAAACGTAACCAGGTCTACTTACCAGACAGACCCTGATGACAGAGACTTCGACCCCACGTTCACCTCCAGGGAATTCCTTTCGGAGAATGCCATCACGGACAAGCTGTTGGACAAGACCTCTGACTCGAAGGAGTTGGTGCTCAACATGACCATGAACAGCATCTTTGCCCAGGGAGACCCAATCAACTCTGTGGGGTCCCACATCGACAGCCTCTACGTTGACTACGAGGACAGTGATGGCATTGTGACCTATACTATCAATGGCACCTACATGGAGCTGAGCAACAGCAAAGCTGTCAATTCATCTGCAGAGACACCGTTTTCAAATGCCACTGTCACCATGACCAGCTCTCAAGGGAACAGAACCCACAAAGCAAG
Seq A exon
GTAGGAGACACATCTTTATAGTCAATCCTATTTATCGTTGTTCTCAACTCATAATAGCACTGTACTCAATACAGACTCATTGCATAATTTGTATCTTCTTTGGAAGCCAGAAGGTAAGTGGGAATAGGATGTCACAAAAGCTTCCCACTAGGGACTGACTTGAAAGAAAGGGCCAATGGTTTGAGTAGAAAGCTGAGAGAGCCTCTGAGCAAGAGGAAGATTTGCCCTTCTCAATGGGGCTGTTGGTGAGGCCATACTGATGGCTGTCCGCTTGCCTATTGCTCTGTCATAGCACGTCATCAGAGCTCATAAAAAAACAAACAAAACTCCTTTTGTCTTGATGTCCCACTCTGATTTCCCTGGGCACCTTCCCCCTAGTTCTGATGCAGCAGAAGTTGATCCTGGGCCCTTTCTATGCACCCCATTGACTGCCGCCCATAGTCCTTCTCCCCCTGGGTAGTCCTGCTGCTTCTCTGCTGCTGGAGAGGCACAGCAGAGCACGAGCTTTTGTGCAGGGCCTACAGAAATAGCCTGGGTTTGTTGCCTTAATGGAGGAAGAAACAGTGCAATTAATCACTGCTCTGATAAGAACATCAAAAGCACTCAGTTGGCAGCTTGGAGTGGTTGACAATAGAACTGGCACTTCAGGATCCCTTTGATGACTGACTGGCTTTGAGCGGTAGCATTACAAAAGTGCAATGGGGAAGCTTAAAAAAGAAGTGTAATCTGTCTCTAGCAGCATAACACACTTGGACAAGGCTGTGTGAAAGTCTCAGGACAGTACTTCCTCAACGTGGATGTGAGGGCATCTCTTGAGGTGCCCCAGGACTCTCAGCAGCGTGTTCTCAGCACAGGGCAGAGCAGTCCTTGCATGAAGCCACAGATGAGAGCATTCCCTAGAGAGCTTGGGCTGACATAGGGCCCTGGGGTCATGCAGGTCTCACAGGCACAGGTATGGGTTTGGGTCCCTCCTGGCTTGGTTGAGTGCACAGCTCCTTTCTGTGCTACTTCAGCTCTGTTGCCCAATTCCCACTGCTAAAACGTGGATTGGGATGCTGAACTTCAGGAGGTGAAAAGCACCGCACAAATGCTCTCTGGTTATAGTTAGCTGTATTTATCTAGAACTTATGCTAGCTTATGCTAAAGAAAATGTCCATGCAGCCAAACATATCAACAGACTTCTTAATGATAAGAACACTTACACATTGCCACGGGCTTGTCTATCATCTCTTCTTGTGGCTTGGCTTGGAAACCCTGCCTCTGCTGCCAAAGCAAGCACTTTGTTAGCACTCTGACAAGTGAGGGCAGCGCCTCAGCTCCCTGCAGTGCTGCTCTCTGGGGTGAGCAGGAGCCTGCCCTGCTCCCTGCACCCTCCCTGGGTGGCCTTGAGCAGCAAGCTGTAACCTATGCCTCTGTTTCGGGGGCTGTTAAATGGGGCTGATGCTTTTCAGCCTTCCCAGGAGGAACTGCACGTGCTTTGAAACTCAGAGCAATGTGACTGTTGCAGGATAACCCCCAACAGACTGTCGGTGTATTGAATGCAGTTACCTGTGCTAAACAAGCAAACCAACAGCTCTCTTCCCATTATCCTCAACTGTCTCTATCAAAGGTGCAGAGGCACAGCTCAGGGATTTAAACCCATGCAGGGGAAGTACCAAGCATTGTGCTTTTCTTCCCATTCCTCCCTTGGCTCTGCTCTGCAGTGTTGCCTCTTCCCACCACTTTCTGGAATGAAACAAATTTTTCAGATCTAAATGATAACAGCTGAAAAAGCTGTTAGCTTTCTGAATTTGGGAGCATCATCCAAAAGAAAAATTGCTTTATTTCACAGGGCCTCACCCTCCAGCCATTCGGAAGGTCCCTTAGCAACTTGTGCTGCCCTGGGGAGTGCATGCATGGAACCAAAACGTGAAAGTAGAGTGTGGGGTCTTGCTCCCCATCCCACCAACCGTGGGCAGGGTGCTGGAGCACGAGGGGTGCATGGAGTAGCACAGGGGCCAGACCTGTTCCTCCAGCAGGAGCAGGGGCGTGTTGTGCTCCAGGAGCCATCCTCCAGGAGTTATCTCCTCTTCAGCTGCACTTGTTAGGATTTCTCCTCCTGCTACAGGGCTGGCTTTGGGAGGACAGGGCAGCCAGAGCATCAGCTGCTGCCAAAAGGGCTGTTTGTTTCTGCTGCCCCATGAAAGTGTTTCACTAGAAAGCAGCAGCAAGGGCTGAGCTGCACCTGGCGCTAATGGCCTGGTGCTGCTCCTGCATGAAAAGCAGAAGTGAAGTGCAGGCATGGAAGCAAACATTATCACAGTGCTCGTCATAAATAGGAAAAAAACCCACCCATGTTGTTTATAGGACGATGTGCTCCTGTTGGCATTTAGAGAGCAAAAACATGTTTTGTCTTTGCTGGAAATGATGAGAGCTGAGCACTGACCTGTGACCAAATGTCTGGCTTATCCAGAAAGAACTTATCCCCGTGACCTCATTACACATAGAAGCCCTTTAGGATCACATTAAAGGGGCAGTGCTGATGGGTTTTCTGCCGTCAGATGCTCATTTTATTTTCCCCTTGTGAACCTGGGCAAGGATGCTTCAATCTCAGGGCAACGTGATGCTGGCATTGGTGCTTTAGAGCAGAGGAGTGAGGTCCCAGCCCCTGTGCCAGGCAGACTGCAACGTAAAGCCCAGATGTGTGTTCCCATGGCTCTTTCTGAATGCTGTCCTGGTGGCTGTGTCAGGGCTGGTGGTGGCAGAGCTGCTTGGCAAGACAAAGCACTGTGCATAGCAAGTCAAGGTGGTTATTTTGGGGGGGAAGGGCAAAAATAGCCACGTTTGTTTCAGTTCCCTTTTGAATGCAGGAAATGACTGTTCTGCCAAAATGAGAGGCAAAATCACCAGGGGAAAGGAGAACTGTGTGTAATCCTCCTGGAGGATCGCTGGAAGGAGGGTGGGTCTGGAAGGGAACGTTTGGATTCTCAGTGTCAGAGTGGATTGGATAGGCTGGCTGTGAACTTACGAACAACTAAATAAGGCAATCCCAGAGCTTCTGCTGCCTAGAAATCGTAAAGCTGCGTATCTTGCCAGGCCAGAGACAGCTGGATGTCAGGATACAGCCTTGTCCCCTGTTCCAATCAGCGTAGGCACCTCCAGGGTCTGGACGAAGGTCTGAGGACCGAAGCCTTCTGTTGGGAAGGTGCCGTATCCCTGACGTGTTACAACATTCCGGGATGTTACGACGTCGTTCTTGGTTTGACGCTGCTTTTTCGCACACCAGGCTGAATCTGTTCTCCCTTCCCCAATGGCGTTACGCGTTTGACCGTAGCGTGAACGTGAGCGATGCGAATCATGCATCCAAACCAAAACAATCCAGCGAGAGAGAGTGGCCGAGGCAGCAGGTAGGCGAGCAGCGTGCCTTCGTGTCCCAAAGCAAAGCGTCAGGCTGCTGAGACCCCGAGGCAGGAGCTGGGAGCAGCCCAAGCCCAGCAGCGCCGCGAGGAGATGCTGCGCCTTTAGCCGCTGTGCGCCCAGGGCCGGGTGTATCTGAGCAGAAAATGCAAACTTTTTTGTGAAATTCTGAACTGTTTCTACTTGTGGGTATTTTTATCCCATTCTCTCTATTTCTAGACAGTGGAAGCTCTGCCTCTAACCGGGCTGGGGATTCTACTTGGGGCTCAGGACAGGTATGTTGTGAAACGAAACGAAACAATTCAAACCAACAAACCCCAAAAAATCAGAGCAACCAAACCCAACCGACAAACCAAGCCAATCCCCTCCCAAACCCAACCTGCTCGCAGACGTGTCTCTCTGACGTGGCATATCACGGCTCTCCTTGTCAACGCTATCTTATTTTATTCTTTTTTGTGCTTGTTGCTAG
Seq C2 exon
AAACAGATTGAAGTTGTTAAGAAAGGGCCAAGGTGTGAGTGCTGCTGACATGTACAGGTGGAAGCTTTCCTCCCATGAACCCTGCAGCTCTACATGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]