GgaEX0003813 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:7657072-7658742:+
Coord C1 exon
chr17:7657072-7657127
Coord A exon
chr17:7657322-7657425
Coord C2 exon
chr17:7658616-7658742
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTGCTTGTTGCTAGAAA
3' ss Score
6.66
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
ACAGTGGAAGCTCTGCCTCTAACCGGGCTGGGGATTCTACTTGGGGCTCAGGACAG
Seq A exon
AAACAGATTGAAGTTGTTAAGAAAGGGCCAAGGTGTGAGTGCTGCTGACATGTACAGGTGGAAGCTTTCCTCCCATGAACCCTGCAGCTCTACATGCACCACAG
Seq C2 exon
GAGTGATGTCCACGTATGCTATGTGCGTCCGCTATGATGGGATCGAAGTGGACGATACGTACTGTGATGCCATGACCCGTCCTGAGCCCGTCCATGAGTTCTGTGCTGGGAGAGAGTGCCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-'14-16,'14-15,15-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGGAAGCTCTGCCTCTA
R:
CTGGCACTCTCTCCCAGCA
Band lengths:
178-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]