DreEX6014352 @ danRer10
Exon Skipping
Gene
ENSDARG00000074033 | adamtsl2
Description
ADAMTS-like 2 [Source:ZFIN;Acc:ZDB-GENE-070705-558]
Coordinates
chr5:65219861-65225743:-
Coord C1 exon
chr5:65225392-65225743
Coord A exon
chr5:65221824-65221924
Coord C2 exon
chr5:65219861-65219987
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTTTTTTATTGCAGGAA
3' ss Score
11
5' ss Seq
TTGGTAATC
5' ss Score
3.39
Exon sequences
Seq C1 exon
AGGGGAACTGCAGCTGGCCCAGTGCAGTAGGAGCTCCTGGGACAGCAACAGTCAGCCGACCGGCAGAGGACATGGTAAACTCTGAAAACCTGATCTGGAGAGTGCTTTTAGGAGAGCGGCTCGGCTCTGATGGTGTCCTCGCCAACATCTCCACCAACCAGCTTCTTACGCATCGAGATGGCTTATCGTCTGAAGCTGAGCCGATGGAGCTGGACTACAGCAGTTTGGAGCAAGCGGGTCTTAATGGCTCACTGCTTGAGTTTACCCTCGGAAACCGACGAAATGACACAGACCTCCTGCTCCCAAACAGAAATCTTACTGCCATTTTACGCAACCGTGGCAATCGCACCAG
Seq A exon
GAATAACCATAGGCTCCTTCAGAAGAACAAACCAAGCGCTGCTGACATGTACCGGTGGAAGTTGTCCACACAGGAGCCCTGCAGTATGACATGCTCCATTG
Seq C2 exon
GTGTGTCAAAATCACTTGCCATGTGTGTGCGGTATGATGGCATCGAGGTGGATGATGTTTACTGTGACGCTTTGACTCGACCTGAGCCGGTTCATGATTTCTGCATTGGTAGAGAATGCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074033-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=0.171 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGTCTGAAGCTGAGCCGA
R:
CTCAGGTCGAGTCAAAGCGTC
Band lengths:
255-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]