HsaEX6063769 @ hg19
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:14631]
Coordinates
chr9:136420680-136432184:+
Coord C1 exon
chr9:136420680-136421052
Coord A exon
chr9:136426320-136426417
Coord C2 exon
chr9:136432058-136432184
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTGCTTGGTCTCGCTTTCAGGAC
3' ss Score
10.81
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACCGCAACGTCACGGGGACTCCTCTCACCGGGGACAAGGATGACGAAGAGGTTGACACCCACTTCGCCTCCCAGGAGTTCTTCTCGGCTAACGCCATCTCTGACCAGCTGCTGGGCGCAGGCTCTGACTTGAAGGACTTCACCCTCAATGAGACTGTGAACAGCATCTTTGCACAGGGCGCCCCAAGGAGCTCCCTGGCCGAGAGCTTCTTCGTGGATTATGAGGAGAACGAGGGGGCTGGCCCTTACCTGCTCAACGGGTCCTACCTGGAGCTGAGCAGCGACAGGGTTGCCAACAGCTCCTCCGAGGCCCCATTCCCCAACGTTAGCACCAGCCTGCTCACCTCGGCCGGGAACAGGACTCACAAGGCCAG
Seq A exon
GACCAGGCCCAAGGCGCGCAAGCAAGGCGTGAGTCCCGCGGACATGTACCGGTGGAAGCTCTCGTCCCACGAGCCCTGCAGTGCCACCTGCACCACAG
Seq C2 exon
GGGTCATGTCTGCGTACGCCATGTGTGTCCGCTATGATGGCGTCGAGGTGGATGACAGCTACTGTGACGCCCTGACCCGTCCCGAGCCTGTCCACGAGTTCTGCGCTGGGAGGGAGTGCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGAGGAGAACGAGGGGGC
R:
CATGGCGTACGCAGACATGAC
Band lengths:
179-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)