RnoEX6016074 @ rn6
Exon Skipping
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5640671-5647851:+
Coord C1 exon
chr3:5640671-5641040
Coord A exon
chr3:5644672-5644769
Coord C2 exon
chr3:5647725-5647851
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGGCCGTGTTTCAGGAC
3' ss Score
9.12
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACCACAATGCCACTGGGAGAGCTCTCTTGGGGGACAAGGATGACCGGGAGATCAGTGCCCATTTCACCTCCCATGAGCTTCTCTCAGCCAACACCATCTCCGATCAGCTCTTGGGCACAGGCTCTGACTCGGAAGAGTTCTCACTCAACGAGACCATGAACAGCATCTTTGCCCAGGGTGCCCCCAGAAGCTCTCCAGCTGAGAGCCTCTATGTGGATTATGAAGAGAATGAGGGGCCTGCTGCCTACTTGATCAATGGGTCTTACCTGGAACTGAACAGTGACAGGATCAATACCTCCTCCGAGGCCCCATTCCCCAACACCAGCGCCAGCCTCCCCAGCTTGGCTGGGAACAGGACTCACAAGGCAAG
Seq A exon
GACCAGACCCAAGGCACGCAAGCAAGGTGTGAGTCCAGCCGACATGTATCGGTGGAAGCTTTCATCCCAGGAGCCCTGCAGTGCCACATGCACCACAG
Seq C2 exon
GAGTCATGTCTGCCTATGCCATGTGCGTTCGCTACGATGGCGTTGAAGTGGATGACAGCTACTGCGATGCCCTGACCCGTCCTGAGCCCGTCCATGAATTCTGCGCTGGGAGGGAGTGCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-'17-21,'17-18,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.265 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCTGCCTACTTGATCAA
R:
TAGCGAACGCACATGGCATAG
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]