MmuEX6099832 @ mm10
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27095403-27101733:+
Coord C1 exon
chr2:27095403-27095772
Coord A exon
chr2:27098606-27098703
Coord C2 exon
chr2:27101607-27101733
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGACCGTGTTTCAGGAC
3' ss Score
9.14
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACCACAATGCCACTGGGAGAGCTTTCTCCGCGGACAAGGATGACCGGGAGATCAGTGCCCATTTCACCTCCCACGAGCTTCTCTCAGCCAACACCATCTCCGACCAGCTCTTGGGCACAGGCTCTGAATCAGAAGAGTTCTCACTCAATGAGACCATGAATAGCATCTTTGCCCAGGGTGCTCCCAGAAGCTCCCCAGCTGAGAGCCTCTATGTGGATTATGAGGAGAATGAGGGGCCTGCTGCCTACTTGATCAATGGGTCTTACCTGGAGCTGAGCAGTGACAGGATCAACACCTCCTCTGAGGCCCCATTCCCCAACACCAGTGCCAGCCCCCCCAACTTGGCTGGGAACAGGACTCACAAGGCAAG
Seq A exon
GACCAGACCCAAGGCACGCAAGCAAGGTGTGAGCCCAGCTGACATGTACCGGTGGAAGCTCTCATCCCATGAGCCCTGCAGTGCCACATGCACCACAG
Seq C2 exon
GAGTCATGTCCACCTATGCCATGTGTGTTCGCTATGATGGTGTTGAAGTGGATGACAGCTACTGCGATGCCCTCACCCGTCCTGAGCCTGTCCACGAATTCTGCGCTGGGAGGGAGTGCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'20-23,'20-22,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.265 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCTTACCTGGAGCTGAG
R:
TCGCAGTAGCTGTCATCCACT
Band lengths:
181-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types