BtaEX0002510 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104490781-104500260:+
Coord C1 exon
chr11:104490781-104491153
Coord A exon
chr11:104495779-104495876
Coord C2 exon
chr11:104500134-104500260
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCACCCGCTTTCAGGAC
3' ss Score
10.37
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
ACGGTAACGCCACCCTGACTGCTCTGGTGGGAGACCCGGACGACCGAGAGGCCGACGCCCGTTTCGCCTCCCAGGAGCTGCTGTCGGCCAACGCCATCTCTGATCAGCTGCTGGGCGCAGGCTCCGACTCCAGGGAGCTCTCCCTCAACGAGACCGTCAACAGCATCTTCTCCCAGGGTGCCCCGAGGGGCTCCCCAGCCGAGAGCCTCTACCTGGACTACGAGGAGAGCGAGGGGGCCGGAGCTTACCTGCTCAATGGGTCCTACCTGGAGCTGAGCAGTGACAGGCTGGCCAACACCTCCTCCGAGGCCCCCTTTCCCAACGCCAGCGCCAGCCTCCCCGCCTTGGCCGGGAACCGGACGCAGAAGGCCAG
Seq A exon
GACCAGGCCCAAGTCCCGCAAGCAAGGCGTGAGCCCCGCGGACATGTACCGGTGGAAGCTGTCGTCCCACGAGCCCTGCAGCTCCACCTGCACCACAG
Seq C2 exon
GGGTCCTGTCGACCTACGCCATGTGCGTCCGCTATGACGGCATCGAGGTGGACGACAGCTACTGCGATGCCCTGACCCGGCCCGAGCCTGTCCAGGAGTTCTGCGCAGGCAGGGAGTGCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTACCTGCTCAATGGGTCC
R:
TCCACCTCGATGCCGTCATAG
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development