GgaEX0004104 @ galGal3
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2611486-2613302:-
Coord C1 exon
chr20:2613015-2613302
Coord A exon
chr20:2612560-2612643
Coord C2 exon
chr20:2611486-2611589
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCCTTCCTTTTTTATTACAGTTT
3' ss Score
8.94
5' ss Seq
AAGGCAAAT
5' ss Score
1.13
Exon sequences
Seq C1 exon
TAGTGTTGTTGTCGCTGTCTTCTCTCACTCTCTAACATCAAGAGCATGTTTGGTGACTGCACATCGCTGATAGCAGCCCAGCGGTGGGTGACTTCTCCGTGCACTGACTTCTTGCTCCTTCCCTCCTTTCAGCGTTCAGGTGTCTTTCATTCTTCTTTTGCTGTTGGCAAGTCCTCCTCCAGCCAGACAAGATGTCTATGCTGGACATGAGCGAGTTTGGGGAGGCTGCTGAATACCTCCGGAAAAGCTACACAGAGCAGCTGAAGCTTCAGACAATCCCATTTGATG
Seq A exon
TTTGCCTGCAAGCACATGGGAAACAGCAGACTTCATTCATGCATTTGACCCAGGCAAATTAAACAGCTACCAAACGTGGAAAAG
Seq C2 exon
GGAAGAAGCGTGCTTGGATCCCGGATGAGAAAGAAGCTTACATTGAAGTGGAAATCAAAGAAAGCACTGGTGGCAAAGTCACTGTGGAAACTAAAGATAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157_CASSETTE5
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0273614=Myosin_N=PU(78.6=94.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGAGCGAGTTTGGGGAG
R:
ACAGTGACTTTGCCACCAGTG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]