GgaEX0004104 @ galGal4
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2967282-2968395:-
Coord C1 exon
chr20:2968295-2968395
Coord A exon
chr20:2967840-2967923
Coord C2 exon
chr20:2967282-2967382
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCCTTCCTTTTTTATTACAGTTT
3' ss Score
8.94
5' ss Seq
AAGGCAAAT
5' ss Score
1.13
Exon sequences
Seq C1 exon
CAAGATGTCTATGCTGGACATGAGCGAGTTTGGGGAGGCTGCTGAATACCTCCGGAAAAGCTACACAGAGCAGCTGAAGCTTCAGACAATCCCATTTGATG
Seq A exon
TTTGCCTGCAAGCACATGGGAAACAGCAGACTTCATTCATGCATTTGACCCAGGCAAATTAAACAGCTACCAAACGTGGAAAAG
Seq C2 exon
GGAAGAAGCGTGCTTGGATCCCGGATGAGAAAGAAGCTTACATTGAAGTGGAAATCAAAGAAAGCACTGGTGGCAAAGTCACTGTGGAAACTAAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGAGCGAGTTTGGGGAG
R:
ACAGTGACTTTGCCACCAGTG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]