GgaEX0005252 @ galGal4
Exon Skipping
Gene
ENSGALG00000003923 | COL6A3
Description
collagen alpha-3(VI) chain precursor [Source:RefSeq peptide;Acc:NP_990865]
Coordinates
chr7:4799267-4805022:+
Coord C1 exon
chr7:4799267-4799341
Coord A exon
chr7:4801533-4801712
Coord C2 exon
chr7:4804852-4805022
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTGCACCTTTTGATATGCAGATT
3' ss Score
6.75
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AGACCCCAGCGCAGCCCAAAGTGGCTCTGGCCAACATGATGCTGAACGCTGAGCCACTGGAAGGGCCTGAAAATG
Seq A exon
ATTTGGCAGACCCTTGCTTGCTGGACTTTGACATGGGCATGCAGTGCAAGGACTATCAGGTTGTATGGTTCTTTGACTACAAACACAAGATCTGCAGCCAGGGTTGGTATGGTGGCTGTGGTGGTAATGCCAATAGATTTGAGACCGAAGCTGAGTGCAATAGCAAATGCTTGAAGCCAT
Seq C2 exon
TCATGGACATCTGCCTGCTGCAGAAGGAGGAGGGGACCTGCAGGGACTTTGTGCTCAAGTGGCACTACGACCTGAAGACCAAGAGCTGTGCCAGGTTCTGGTACGGCGGCTGCGGAGGCAACGAGAACAGATTCAACACGCAGAAAGAATGCGAAAAAGCCTGCAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003923_MULTIEX1-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF115933=Med3=FE(12.0=100)
A:
PF115933=Med3=PD(19.1=80.3),PF0001418=Kunitz_BPTI=WD(100=88.5)
C2:
PF115933=Med3=PD(1.0=3.4),PF0001418=Kunitz_BPTI=WD(100=91.4)
Main Inclusion Isoform:
ENSGALT00000006250fB549
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCAAAGTGGCTCTGG
R:
AGGGCTGCAGGCTTTTTCG
Band lengths:
234-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]