GgaEX0005253 @ galGal4
Exon Skipping
Gene
ENSGALG00000003923 | COL6A3
Description
collagen alpha-3(VI) chain precursor [Source:RefSeq peptide;Acc:NP_990865]
Coordinates
chr7:4801533-4805022:+
Coord C1 exon
chr7:4801533-4801712
Coord A exon
chr7:4801825-4801878
Coord C2 exon
chr7:4804852-4805022
Length
54 bp
Sequences
Splice sites
3' ss Seq
CAACACACTTTTTCCTCCAGCAG
3' ss Score
5.89
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTGGCAGACCCTTGCTTGCTGGACTTTGACATGGGCATGCAGTGCAAGGACTATCAGGTTGTATGGTTCTTTGACTACAAACACAAGATCTGCAGCCAGGGTTGGTATGGTGGCTGTGGTGGTAATGCCAATAGATTTGAGACCGAAGCTGAGTGCAATAGCAAATGCTTGAAGCCAT
Seq A exon
CAGCAGCTGAGAAAGCCATGCAGCAGCCACCCCTTGAGAAAAGATTATCGCCAG
Seq C2 exon
TCATGGACATCTGCCTGCTGCAGAAGGAGGAGGGGACCTGCAGGGACTTTGTGCTCAAGTGGCACTACGACCTGAAGACCAAGAGCTGTGCCAGGTTCTGGTACGGCGGCTGCGGAGGCAACGAGAACAGATTCAACACGCAGAAAGAATGCGAAAAAGCCTGCAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003923_MULTIEX1-3/3=2-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.579 C2=0.006
Domain overlap (PFAM):
C1:
PF115933=Med3=PD(19.1=80.3),PF0001418=Kunitz_BPTI=WD(100=88.5)
A:
PF115933=Med3=PD(3.7=42.1)
C2:
PF115933=Med3=PD(1.0=3.4),PF0001418=Kunitz_BPTI=WD(100=91.4)
Main Inclusion Isoform:
ENSGALT00000006250fB550
Main Skipping Isoform:
ENSGALT00000006250fB549
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGACCGAAGCTGAGTGC
R:
GCACAGCTCTTGGTCTTCAGG
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]