GgaEX0005266 @ galGal3
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
NA
Coordinates
chr17:6506768-6513010:+
Coord C1 exon
chr17:6506768-6506873
Coord A exon
chr17:6512446-6512496
Coord C2 exon
chr17:6512977-6513010
Length
51 bp
Sequences
Splice sites
3' ss Seq
CAGACTTCTTCCTTTAACAGGTC
3' ss Score
10.07
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
ATTGCTGCTAAAATTGGAGATATTCCTCACTTGAATAATTCTACAGCACTCGTGGACCCGTCAGTTTACGGTTATGGAGTGCAGAAACGGCCCCTTGATGATGGAG
Seq A exon
GTCTCCGTGTAAGTGGGCTCCATGGAGCACAGATAAGAGATACAGAGAGAA
Seq C2 exon
TAGGTAACCAGTTAGGGGCCCTGGTACATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941_MULTIEX1-1/7=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTAAAATTGGAGATATTCCT
R:
GATGTACCAGGGCCCCTAACT
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event