GgaEX0005266 @ galGal4
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5918184-5924420:+
Coord C1 exon
chr17:5918184-5918289
Coord A exon
chr17:5923856-5923906
Coord C2 exon
chr17:5924387-5924420
Length
51 bp
Sequences
Splice sites
3' ss Seq
CAGACTTCTTCCTTTAACAGGTC
3' ss Score
10.07
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
ATTGCTGCTAAAATTGGAGATATTCCTCACTTGAATAATTCTACAACACTCGTGGACCCGTCAGTTTACGGTTATGGAGTGCAGAAACGGCCCCTTGATGATGGAG
Seq A exon
GTCTCCGTGTAAGTGGGCTCCATGGAGCACAGATAAGAGATACAGAGAGAA
Seq C2 exon
TAGGTAACCAGTTAGGGGCCCTGGTACATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941_MULTIEX1-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.046 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTAAAATTGGAGATATTCCT
R:
GATGTACCAGGGCCCCTAACT
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]