GgaEX0005675 @ galGal3
Exon Skipping
Gene
ENSGALG00000004273 | RGPS1_CHICK
Description
NA
Coordinates
chr8:6693134-6717437:-
Coord C1 exon
chr8:6717239-6717437
Coord A exon
chr8:6712979-6713114
Coord C2 exon
chr8:6693134-6693265
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTCTCTTGCAAAGATC
3' ss Score
7.01
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
CCGGTGCTGCCCTCAGGGGGAGGCTGCGCTTCCCGCTTCCCCGCAATTCCCGGTGAGCGCCGGTGACTGAGGAGGGGGCGCGCACCCCACCGTTGGGCTGGCGCGTGCGCACGGGAGGAGGCGGGCCGGGAGCGCTCATCGCGCATGCGCGGGCGGCGCCGGCGGGGCTCCCCCCGCCCCCGCGCGCGCGTGTGTGTGT
Seq A exon
ATCTTTACGGGCCGTGTAGGACACCAAGGGAACTGGCGTTAGAACCGTGCCTGTGGTCAAGCTGGTATCATCCTGTATTCTGCCAAGCAGAAGGAGGACATCTCCAACCAGAGATGGAGCGAGACATCAGTCAGAG
Seq C2 exon
GAATGATCATTCAGTTGCCTTGGAGATGAACCTTCTGCTGTAAATGTAGGGCTGGACATTAATGTTGTGGGCAGTATGGACCTAATGAACGGACAGTCAAGCAGTGTTAATATTGCAGCTACTGCTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.158
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGACTGAGGAGGGGG
R:
ACACTGCTTGACTGTCCGTTC
Band lengths:
246-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]