GgaEX0005675 @ galGal4
Exon Skipping
Gene
ENSGALG00000004273 | RALGPS2
Description
Ras-specific guanine nucleotide-releasing factor RalGPS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZJK0]
Coordinates
chr8:6368126-6391493:-
Coord C1 exon
chr8:6391393-6391493
Coord A exon
chr8:6387971-6388106
Coord C2 exon
chr8:6368126-6368257
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTCTCTTGCAAAGATC
3' ss Score
7.01
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GCCCCTCAGCGAGCGGGGGGCCCCGAGCACGGCGAGCGCGGCCCGGCAGCCGGAGCGCCTTCTCCGCCCGCCCCCGCTCCTCGCTCGTCGCCGTCTCGCAG
Seq A exon
ATCTTTACGGGCCGTGTAGGACACCAAGGGAACTGGCGTTAGAACCGTGCCTGTGGTCAAGCTGGTATCATCCTGTATTCTGCCAAGCAGAAGGAGGACATCTCCAACCAGAGATGGAGCGAGACATCAGTCAGAG
Seq C2 exon
GAATGATCATTCAGTTGCCTTGGAGATGAACCTTCTGCTGTAAATGTAGGGCTGGACATTAATGTTGTGGGCAGTATGGACCTAATGAACGGACAGTCAAGCAGTGTTAATATTGCAGCTACTGCTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273-'2-11,'2-0,6-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.158
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTCGTCGCCGTCTC
R:
CAGTAGCTGCAATATTAACACTGCT
Band lengths:
146-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]