GgaEX0005803 @ galGal4
Exon Skipping
Gene
ENSGALG00000004333 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr18:8246321-8248482:-
Coord C1 exon
chr18:8248314-8248482
Coord A exon
chr18:8246847-8246905
Coord C2 exon
chr18:8246321-8246431
Length
59 bp
Sequences
Splice sites
3' ss Seq
AATGCCGTGTCTTCTTTCAGAAT
3' ss Score
10.59
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GGGAGTTCGGACTGCGCCGCTCATCGTTTTTCTTTATGAAGCCCTCATTTTGGTCAAAGCGCAGGAAGAATTACGAGGAGTTGTATGAGAGCAGCATCAATGGCAACCTCAGCTGCAGTGAGATGGTCGAGCCCGTGCCATCCGAGTTCCAGGGGAAGGAAGCCATCAG
Seq A exon
AATCAGCTGTGTTCAGAAAACATTCAGGAAAAAAGGGGAAACTGTGGAGGCTCTCAGAA
Seq C2 exon
ACCTGTCCTTTGACATCTACGAGGGGCAGATCACAGCTCTGCTGGGGCACAGCGGCACCGGGAAGACAACACTGATGAACATCCTCTGTGGGCTGTGTCCCCCAACAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(1.4=9.5)
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCAGGAAGAATTACGAGG
R:
CTGTGATCTGCCCCTCGTAGA
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]