GgaEX0006088 @ galGal3
Exon Skipping
Gene
ENSGALG00000004512 | SHLB2_CHICK
Description
NA
Coordinates
chr17:5990226-5991505:-
Coord C1 exon
chr17:5991405-5991505
Coord A exon
chr17:5990959-5990973
Coord C2 exon
chr17:5990226-5990490
Length
15 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTCCATGCTTGCAGCTC
3' ss Score
8.78
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGAATCATCTTCGCTGTCTCCATGAGTTTGTGGAGTCTCAGACCAACTACTACGCTCAGTGCTATCAGTACATGCTGGACCTGCAGAAGCAGCTGGGCAG
Seq A exon
CTCCAAAGGAGAAAT
Seq C2 exon
ATTTTCAGGCACGTTTGTAGGGAATGCAGAATCCACATCTCCACCCCCAGCTGCTGCCTCTCCTCCAGCTGTCGCTGCCACCACTCTCCCCGCTGTGCCTACCATCCCAGTTGTCCCCACCATTGTTGGGGTGCCGAATACTGTGGCAGAGAGCGTCCTGAACCCAAATGAAGTCAAGCCTCCTGCCAGCGGGACGCGGAAGGCCAGGGTCCTGTATGACTATGAAGCAGCTGACAGCACCGAGCTGGCACTTCTTGCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004512-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.352
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(12.0=100)
A:
PF0311413=BAR=PD(0.1=0.0)
C2:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(35.3=20.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACTACTACGCTCAGTGC
R:
GGGTGGAGATGTGGATTCTGC
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event