GgaEX0006088 @ galGal4
Exon Skipping
Gene
ENSGALG00000004512 | SH3GLB2
Description
Endophilin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZJ81]
Coordinates
chr17:5434835-5436114:-
Coord C1 exon
chr17:5436014-5436114
Coord A exon
chr17:5435568-5435582
Coord C2 exon
chr17:5434835-5435099
Length
15 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTCCATGCTTGCAGCTC
3' ss Score
8.78
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGAATCATCTTCGCTGTCTCCATGAGTTTGTGGAGTCTCAGACCAACTACTACGCTCAGTGCTATCAGTACATGCTGGACCTGCAGAAGCAGCTGGGCAG
Seq A exon
CTCCAAAGGAGAAAT
Seq C2 exon
ATTTTCAGGCACGTTTGTAGGGAATGCAGAATCCACATCTCCACCCCCAGCTGCTGCCTCTCCTCCAGCTGTCGCTGCCACCACTCTCCCCGCTGTGCCTACCATCCCAGTTGTCCCCACCATTGTTGGGGTGCCGAATACTGTGGCAGAGAGCGTCCTGAACCCAAATGAAGTCAAGCCTCCTGCCAGCGGGACGCGGAAGGCCAGGGTCCTGTATGACTATGAAGCAGCTGACAGCACCGAGCTGGCACTTCTTGCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004512-'16-23,'16-22,17-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.352
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(12.0=100)
A:
PF0311413=BAR=PD(0.1=0.0)
C2:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(35.3=20.2)
Main Inclusion Isoform:
ENSGALT00000007187fB655
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACTACTACGCTCAGTGC
R:
GGGTGGAGATGTGGATTCTGC
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]