GgaEX0006128 @ galGal3
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
NA
Coordinates
chr17:5978435-5979926:+
Coord C1 exon
chr17:5978435-5978580
Coord A exon
chr17:5979374-5979427
Coord C2 exon
chr17:5979745-5979926
Length
54 bp
Sequences
Splice sites
3' ss Seq
AGAATGTGGTGTTTATACAGCTC
3' ss Score
4.47
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
CGAGTTGGGTTCTGTGGATAAAATCATAAACTCCTTGACGCAGATTCTGGAGGGAGTACTACAGGCAGATCAGCAGATGATGGAGAAAACCAAAGCCAAAGTGTTCTCAGCTCTTATCACTGTGCTGCAGATGAAGGAGATGAAAG
Seq A exon
CTCATGGACAGCAGGCTGCATCCATGGACTGGTGCCAGCAATCTGGAGAAATGG
Seq C2 exon
TGAATGAGATCCCTCAGTACTCCCAGCTGGTGCTGAGTGTGTGTGAAACTCTCCAGGATGAGGTCATTGCACTCTTTGATCAGACTCGACATAGCCTGACCTTGGGGGATGCCACAGATGACAAGGACAGCATGGAAACAGATGATGCCTCCCGAGTTAAACACAAGGACCAGCGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548_MULTIEX2-5/5=4-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACGCAGATTCTGGAGGGA
R:
CAGCTGGGAGTACTGAGGGAT
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event