GgaEX0006128 @ galGal4
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
nucleoporin NUP188 homolog [Source:RefSeq peptide;Acc:NP_001025861]
Coordinates
chr17:5423189-5424680:+
Coord C1 exon
chr17:5423189-5423334
Coord A exon
chr17:5424128-5424181
Coord C2 exon
chr17:5424499-5424680
Length
54 bp
Sequences
Splice sites
3' ss Seq
AGAATGTGGTGTTTATACAGCTC
3' ss Score
4.47
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
CGAGTTGGGTTCTGTGGATAAAATCATAAACTCCTTGACGCAGATTCTGGAGGGAGTACTACAGGCAGATCAGCAGATGATGGAGAAAACCAAAGCCAAAGTGTTCTCAGCTCTTATCACTGTGCTGCAGATGAAGGAGATGAAAG
Seq A exon
CTCATGGACAGCAGGCTGCATCCATGGACTGGTGCCAGCAATCTGGAGAAATGG
Seq C2 exon
TGAATGAGATCCCTCAGTACTCCCAGCTGGTGCTGAGTGTGTGTGAAACTCTCCAGGATGAGGTCATTGCACTCTTTGATCAGACTCGACATAGCCTGACCTTGGGGGATGCCACAGATGACAAGGACAGCATGGAAACAGATGATGCCTCCCGAGTTAAACACAAGGACCAGCGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000039668fB660
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACGCAGATTCTGGAGGGA
R:
CAGCTGGGAGTACTGAGGGAT
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]