GgaEX0006808 @ galGal3
Exon Skipping
Gene
ENSGALG00000004971 | URM1_CHICK
Description
NA
Coordinates
chr17:5595072-5597793:-
Coord C1 exon
chr17:5597701-5597793
Coord A exon
chr17:5595858-5595980
Coord C2 exon
chr17:5595072-5595142
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTGCAATCCCATTTTTTCAGGTG
3' ss Score
8.27
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTACTTCCGGCGCGGCCTGGGCGCGCCTTCCCTTCCCTTCCCTCTCGCCGCCGCCAAGATGGCGGCGCCCGTGTCGCTGCAGGTGGAGTTCGG
Seq A exon
GTGTGAAGGCAGCTCCTGTACTTGCCCATCTCTTTATCTTCAGTGTTTTGTTCACGCTTCATCTCTCTTAAAAAGCTGTGGTTGCAGAGACCTTCACTTTGTTCTGTAGGGCTGGTCCTGCTG
Seq C2 exon
GGGTGGTGCAGAACTCTTGTTCGATGGTGTAAAAAAGCATCAGGTGACTTTGCCTTCTCAGCCAGAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004971_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0363810=TCR=PU(10.8=33.3)
A:
PF0363810=TCR=PD(86.5=86.5)
C2:
PF091386=Urm1=FE(25.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCTTCCCTTCCCTCTC
R:
AAGGCTCTGGCTGAGAAGGC
Band lengths:
139-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]