GgaEX0006808 @ galGal4
Exon Skipping
Gene
ENSGALG00000004971 | URM1
Description
Ubiquitin-related modifier 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZJU4]
Coordinates
chr17:4964656-4967571:-
Coord C1 exon
chr17:4967295-4967571
Coord A exon
chr17:4965442-4965564
Coord C2 exon
chr17:4964656-4964726
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTGCAATCCCATTTTTTCAGGTG
3' ss Score
8.27
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAAGAACAACTTGGTGAATGGCAAGACGTGAATTTAATGCAGAATAGGTGTTTCGGGTTTCGTTCTGGGTGTTTTTTAAAAAGCTTAGGCTGGGGCTCCCGGCAGATGAGGCTGTCTCGCAGCCCGATGGGCGCAGGCCGCCGCCCCGGCCCAGCCGTTGCCAGAGTAACGCGGCGCGGCCGGAAGGTCTCTCGGGTACTTCCGGCGCGGCCTGGGCGCGCCTTCCCTTCCCTTCCCTCTCGCCGCCGCCAAGATGGCGGCGCCCGTGTCGCTGCAG
Seq A exon
GTGTGAAGGCAGCTCCTGTACTTGCCCATCTCTTTATCTTCAGTGTTTTGTTCACGCTTCATCTCTCTTAAAAAGCTGTGGTTGCAGAGACCTTCACTTTGTTCTGTAGGGCTGGTCCTGCTG
Seq C2 exon
GGGTGGTGCAGAACTCTTGTTCGATGGTGTAAAAAAGCATCAGGTGACTTTGCCTTCTCAGCCAGAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004971_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0363810=TCR=PD(86.5=86.5)
C2:
PF091386=Urm1=FE(25.0=100)
Main Inclusion Isoform:
ENSGALT00000007972fB738
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGGGTTTCGTTCTGGGTG
R:
AACAAGAGTTCTGCACCACCC
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]