DreEX6087250 @ danRer10
Exon Skipping
Gene
ENSDARG00000091198 | urm1
Description
ubiquitin related modifier 1 [Source:ZFIN;Acc:ZDB-GENE-091204-300]
Coordinates
chr10:10354786-10365779:+
Coord C1 exon
chr10:10354786-10354861
Coord A exon
chr10:10359108-10359178
Coord C2 exon
chr10:10365698-10365779
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTATGTGCCTTTTGTTTCAGAGG
3' ss Score
9.77
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TTTCCTGAGGATGTGAGATTACTTCCGGGTTTTACAACAACATGGCAGCGCCCTTAGGTCTGCATCTGGAGTTTGG
Seq A exon
AGGAGGAGCTGAGCTGCTATTTGATGGGGTCAAGAATCATCATGTGACACTGCCTGACCAATCAAATCCCT
Seq C2 exon
GGGACATGAAGCAGCTGCTGGCGTGGATCCGAGGGAACATGCTAAAGGAGCGCCCAGAGCTTTTTATGCAGGGCGACACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091198-'0-6,'0-0,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=PU(6.2=50.0)
A:
PF091386=Urm1=FE(25.3=100)
C2:
PF091386=Urm1=FE(28.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGTGAGATTACTTCCGGGT
R:
ACAGTGTCGCCCTGCATAAAA
Band lengths:
151-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]