MmuEX0050747 @ mm9
Exon Skipping
Gene
ENSMUSG00000069020 | Urm1
Description
ubiquitin related modifier 1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915455]
Coordinates
chr2:29682862-29697003:+
Coord C1 exon
chr2:29682862-29682955
Coord A exon
chr2:29688212-29688282
Coord C2 exon
chr2:29696922-29697003
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGCCTTCCTTTTTAGAGG
3' ss Score
9.55
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GAAATAAACGGGCGCTCCGGAAGTTAAAGGGCGTGTCCTGCTAGTTTGGTTTCCTAAACATGGCGGCGCCCTTATGTGTGAAGGTGGAGTTCGG
Seq A exon
AGGTGGTGCAGAGCTCCTGTTTGATGGGGTAAAAAAGCATCAAGTCGCCTTGCCTGGGCAGGAGGAACCCT
Seq C2 exon
GGGATATACGGAACCTCCTTGTCTGGATCAAGAAGAATTTGCTAAAAGAGCGACCAGAGCTGTTCATCCAGGGAGACAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069020-'1-4,'1-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=PU(6.2=50.0)
A:
PF091386=Urm1=FE(25.0=100)
C2:
PF091386=Urm1=FE(28.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGCTCCGGAAGTTAAAG
R:
ACACTGTCTCCCTGGATGAACA
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: