GgaEX1062375 @ galGal3
Exon Skipping
Gene
ENSGALG00000004971 | URM1_CHICK
Description
NA
Coordinates
chr17:5582532-5597771:-
Coord C1 exon
chr17:5597701-5597771
Coord A exon
chr17:5595072-5595142
Coord C2 exon
chr17:5582532-5582613
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTCTTTTTATTTCAGGGG
3' ss Score
10.09
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GCGCCTTCCCTTCCCTTCCCTCTCGCCGCCGCCAAGATGGCGGCGCCCGTGTCGCTGCAGGTGGAGTTCGG
Seq A exon
GGGTGGTGCAGAACTCTTGTTCGATGGTGTAAAAAAGCATCAGGTGACTTTGCCTTCTCAGCCAGAGCCTT
Seq C2 exon
GGGATATCAGAAACCTGCTAAAGTGGATCAAACAGAATCTGCTGAAAGAGCGGCCGGAATTATTTATGCAAGGGGAATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004971-'1-10,'1-2,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0363810=TCR=PU(10.8=33.3)
A:
PF091386=Urm1=FE(25.0=100)
C2:
PF091386=Urm1=FE(28.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCTTCCCTTCCCTTC
R:
AGATTCCCCTTGCATAAATAATTCCG
Band lengths:
151-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]