HsaEX6063230 @ hg19
Exon Skipping
Gene
ENSG00000167118 | URM1
Description
ubiquitin related modifier 1 [Source:HGNC Symbol;Acc:28378]
Coordinates
chr9:131133598-131150176:+
Coord C1 exon
chr9:131133598-131133694
Coord A exon
chr9:131140315-131140385
Coord C2 exon
chr9:131150095-131150176
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTCTGGTCCTCCTTTGCAGAGG
3' ss Score
10.24
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CCGGAAATTTGCGGGCGCGCCGGAAGTTGAGGGGAGTTTCCTGCGAGCTCGGCTTCCTCAACATGGCTGCGCCCTTGTCAGTGGAGGTGGAGTTCGG
Seq A exon
AGGTGGTGCGGAGCTCCTGTTTGACGGTATTAAGAAACATCGAGTCACTTTGCCTGGACAGGAGGAACCCT
Seq C2 exon
GGGACATCCGGAACCTGCTCATCTGGATCAAGAAGAATTTGCTAAAAGAGCGGCCAGAGTTGTTCATCCAGGGAGACAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167118-'0-6,'0-2,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=PU(6.2=50.0)
A:
PF091386=Urm1=FE(41.4=100)
C2:
PF091386=Urm1=PD(46.6=93.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGTTGAGGGGAGTTTCC
R:
ACGCTGTCTCCCTGGATGAA
Band lengths:
159-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)