RnoEX0096866 @ rn6
Exon Skipping
Gene
ENSRNOG00000026636 | Urm1
Description
ubiquitin related modifier 1 [Source:RGD Symbol;Acc:1306599]
Coordinates
chr3:8389024-8402643:+
Coord C1 exon
chr3:8389024-8389078
Coord A exon
chr3:8393691-8393761
Coord C2 exon
chr3:8402562-8402643
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTCTGGCTTTCCTTTGTAGAGG
3' ss Score
9.39
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GCTAGTTTGGCTTCCTCAACATGGCGGCGCCCTTATGTGTGGAGGTGGAGTTCGG
Seq A exon
AGGTGGTGCGGAGCTCCTGTTTGATGGGGTAAAAAAGCATCAAGTCACCTTGCCTGGGCAGGAGGAACCCT
Seq C2 exon
GGGATATCCGGAACCTCCTTGTCTGGATCAAGACGAATTTGCTAAAAGAGCGGCCAGAGCTATTCATCCAGGGAGACAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026636-'1-5,'1-0,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=PU(6.2=50.0)
A:
PF091386=Urm1=FE(25.0=100)
C2:
PF091386=Urm1=FE(28.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGTTTGGCTTCCTCAACA
R:
ACTGTCTCCCTGGATGAATAGCT
Band lengths:
135-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]