BtaEX6046405 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025612 | URM1
Description
Bos taurus ubiquitin related modifier 1-like (LOC781062), mRNA. [Source:RefSeq mRNA;Acc:NM_001191120]
Coordinates
chr11:98978450-98992069:+
Coord C1 exon
chr11:98978450-98979333
Coord A exon
chr11:98983685-98983755
Coord C2 exon
chr11:98991988-98992069
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTCTGGCCCTCCTTTGCAGAGG
3' ss Score
9.81
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GAAATCTAAATCGACGGCGAAAGGGGGGTTGGATAGCGAGTCGATGGCTCAAGAGAGAGCTTATTTGGATGCCACTGATAATTCAAGTCAAGTGGACGGGTTCGTCCAAGCGGTGTGCTGACAGAAGGTAATTTGGTAACTAATGCAAGATAAACCGGAACGTAGCTCACGGTCACAGCGCAAAGATGCCAGGTCTCTCCTCCGCCGAGTTGTGGCTGATGTCAGTCGCTTCCGGCCCTAGCTGTTTGAGCGCCGTCCCGAAAAGAAACAGGATGACCAACCAAAACGCCCCTTAACAGGGCCTACGGCCCTCCGGCCTCAGCTTCCGGCTCCAAATCTTCCTCCAATAGCTGAGAAGGAGAGTTTCCTCGGCCCCGCCTCTTCCGTCCGCGGCAACCGGAAACGGGGGGGGGGCAGTAGAGCCGGAAGTTCAGGGGAGTTTCCTGTGAGCTCGGCTTCCTCAACATGGCAGCGCCCTTGTCAGTGGAGGTGGAATTCGG
Seq A exon
AGGCGGTGCGGAGCTCCTGTTCGATGGTGTGAAGAAGCATCAAGTCACCTTGCCTGGACAGGAGGAACCCT
Seq C2 exon
GGGATATCCGCAGCCTCCTTGTCTGGATCAAGAAGAATTTGCTAAAAGAGCGGCCAGAGCTGTTCATCCAAGGAGACAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025612-'0-3,'0-0,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=PU(6.2=50.0)
A:
PF091386=Urm1=FE(25.0=100)
C2:
PF091386=Urm1=FE(28.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGAGCCGGAAGTTCAGGG
R:
ACGCTGTCTCCTTGGATGAAC
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]