GgaEX1062375 @ galGal4
Exon Skipping
Gene
ENSGALG00000004971 | URM1
Description
Ubiquitin-related modifier 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZJU4]
Coordinates
chr17:4953203-4967571:-
Coord C1 exon
chr17:4967295-4967571
Coord A exon
chr17:4964656-4964726
Coord C2 exon
chr17:4953203-4953284
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTCTTTTTATTTCAGGGG
3' ss Score
10.09
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GAAGAACAACTTGGTGAATGGCAAGACGTGAATTTAATGCAGAATAGGTGTTTCGGGTTTCGTTCTGGGTGTTTTTTAAAAAGCTTAGGCTGGGGCTCCCGGCAGATGAGGCTGTCTCGCAGCCCGATGGGCGCAGGCCGCCGCCCCGGCCCAGCCGTTGCCAGAGTAACGCGGCGCGGCCGGAAGGTCTCTCGGGTACTTCCGGCGCGGCCTGGGCGCGCCTTCCCTTCCCTTCCCTCTCGCCGCCGCCAAGATGGCGGCGCCCGTGTCGCTGCAG
Seq A exon
GGGTGGTGCAGAACTCTTGTTCGATGGTGTAAAAAAGCATCAGGTGACTTTGCCTTCTCAGCCAGAGCCTT
Seq C2 exon
GGGATATCAGAAACCTGCTAAAGTGGATCAAACAGAATCTGCTGAAAGAGCGGCCGGAATTATTTATGCAAGGGGAATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004971_MULTIEX1-2/5=C1-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF091386=Urm1=FE(25.0=100)
C2:
PF091386=Urm1=FE(28.1=100)
Main Skipping Isoform:
ENSGALT00000007972fB738
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGGTCTCTCGGGTACTT
R:
TGCATAAATAATTCCGGCCGCT
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]