GgaEX0006809 @ galGal4
Exon Skipping
Gene
ENSGALG00000004971 | URM1
Description
Ubiquitin-related modifier 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZJU4]
Coordinates
chr17:4953203-4964726:-
Coord C1 exon
chr17:4964656-4964726
Coord A exon
chr17:4954459-4954571
Coord C2 exon
chr17:4953203-4953284
Length
113 bp
Sequences
Splice sites
3' ss Seq
AAGGTCCCCATCTGCCACAGGGG
3' ss Score
5.15
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGGTGGTGCAGAACTCTTGTTCGATGGTGTAAAAAAGCATCAGGTGACTTTGCCTTCTCAGCCAGAGCCTT
Seq A exon
GGGTAACGTCGTTTGAAAGAACCCCAGCTCTGCAAAGTGTCCACAATGCCATCAGATCCCATTGCATGTCACAGACTGAGTTGAGCTGCTACGACTGTTTGCTTTTGCTGAAG
Seq C2 exon
GGGATATCAGAAACCTGCTAAAGTGGATCAAACAGAATCTGCTGAAAGAGCGGCCGGAATTATTTATGCAAGGGGAATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004971_MULTIEX1-3/5=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=FE(25.0=100)
A:
PF091386=Urm1=PD(46.6=71.1)
C2:
PF091386=Urm1=FE(28.1=100)
Main Inclusion Isoform:
ENSGALT00000007972fB739
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGTGCAGAACTCTTGTT
R:
CCCCTTGCATAAATAATTCCGGC
Band lengths:
146-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]