GgaEX0006809 @ galGal3
Exon Skipping
Gene
ENSGALG00000004971 | URM1_CHICK
Description
NA
Coordinates
chr17:5582532-5595142:-
Coord C1 exon
chr17:5595072-5595142
Coord A exon
chr17:5583788-5583900
Coord C2 exon
chr17:5582532-5582613
Length
113 bp
Sequences
Splice sites
3' ss Seq
AAGGTCCCCATCTGCCACAGGGG
3' ss Score
5.15
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGGTGGTGCAGAACTCTTGTTCGATGGTGTAAAAAAGCATCAGGTGACTTTGCCTTCTCAGCCAGAGCCTT
Seq A exon
GGGTAACGTCGTTTGAAAGAACCCCAGCTCTGCAAAGTGTCCACAATGCCATCAGATCCCATTGCATGTCACAGACTGAGTTGAGCTGCTACGACTGTTTGCTTTTGCTGAAG
Seq C2 exon
GGGATATCAGAAACCTGCTAAAGTGGATCAAACAGAATCTGCTGAAAGAGCGGCCGGAATTATTTATGCAAGGGGAATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004971-'5-10,'5-9,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=FE(25.0=100)
A:
PF091386=Urm1=PD(46.6=71.1)
C2:
PF091386=Urm1=FE(28.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGTGCAGAACTCTTGTT
R:
CCCCTTGCATAAATAATTCCGGC
Band lengths:
146-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]