GgaEX0007081 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:311134-314305:+
Coord C1 exon
chr8_random:311134-311301
Coord A exon
chr8_random:313535-314020
Coord C2 exon
chr8_random:314192-314305
Length
486 bp
Sequences
Splice sites
3' ss Seq
TAATTATTTTTCCTCTGTAGTCA
3' ss Score
7.39
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTCCCCCAGATATTGCTGGTGACCTTCAGTTGCCTGAGAACATCAGCACTGTGGAGAAGAATCCCATCTCTCTGGTTTGTGAGGCTTCAGGAATCCCCTTGCCATCAGTAATGTGGCTCAAGAATGGATGGCCTGTCACTTCCAACACCTCAGTGCAAATCCTCTCAG
Seq A exon
TCACCTGGATTCTCGGTACAGTAAAATACGTAAGTGAAAGTCCTGCTTTCGACAGTGGATTTTGTGACAGTTTTCTGTACAGAAGTATGAGCACAAATCCCCCATTCTGCAAACACAGTCTGCCTGCTGTATCCAAAGTTTATGCACGAATCTGAAGAGTTTAATGCACACCCCTGACATATTTATGTGCAGTCTGAGGGACCTGTCTATAGCAGGTTGGATTTTCTCTGCATGATCTCTGTAAATGTGTCTCAGAGTTTTCAGTGATACCAAGTTGGTCTGTTGACTTCCTGCATAAATTCTTGACAGACGTCTGAATGCATCAAAGTTCACTTGAACATTAAAAAAAAGGAAAAAAAAGAAGGGATATATCAAAGTAATTTGGAAGTTACTGAATAGAAAAAATAGTGTTATGAATGTTGAATGCAAATCTACAAATACTGAGGATTGAAGCAGATACACAGAAATGAAAGGAGCAGGAGGAAG
Seq C2 exon
GGGGTAGAACGCTTCGTTTGACACATACGACTGTATCAGATGAAGGGCACTATACATGTGTGGTGACCAACGCTGCAGGAGAAGCGAGGAAGGATTTTTATCTTTCTGTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'54-71,'54-70,55-71
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(56.5=84.2)
A:
PF0767911=I-set=PD(7.5=7.7)
C2:
PF0767911=I-set=PD(42.4=92.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATATTGCTGGTGACCTTCAGT
R:
ACAGAAAGATAAAAATCCTTCCTCGC
Band lengths:
271-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]