GgaEX0007357 @ galGal4
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr20:8203405-8208303:-
Coord C1 exon
chr20:8208147-8208303
Coord A exon
chr20:8205916-8206045
Coord C2 exon
chr20:8203405-8203547
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTTGCTTTTTGCAGAAT
3' ss Score
10.56
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACCCGTGCGGGACCATTATTTCCCTGACCTTCACCACCTGAAGTTTGAGCTGGAGGAAGGGACCACGCCAGCCGGCCGGGCCGTGCGCTTCGGCTACAACCCGCTGGAGTTCGAGGGTTTCAGCTGGCGAGGATACGCACAGATGTCCTCCATCCAG
Seq A exon
AATAAAATCAGAGTCACTGTAAACGTGAAGGAGGCAGAGCTCTATCTGTTCCATGTCATCCTGAGGTATATTAATTCAGGAGGGGCCACAGTATATGGCAAAATTACAGCTTATCAGCCACGAAGGAGAG
Seq C2 exon
GTACAGAGCAGAGCAAGCAGATTGTCTTTGCTCCCAGCACGGAGCCAGCCTTTGTCACCGTCCCCCAGAACAGCTTTGGGGAGCCCTTCGTACTCAACCCCAACACGTGGTCTCTGATTGTCGAAGCAGAGGGTGTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(21.4=17.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCTGACCTTCACCACCT
R:
CCACGTGTTGGGGTTGAGTAC
Band lengths:
249-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]