RnoEX6058089 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3809188-3812624:+
Coord C1 exon
chr18:3809188-3809344
Coord A exon
chr18:3812009-3812141
Coord C2 exon
chr18:3812482-3812624
Length
133 bp
Sequences
Splice sites
3' ss Seq
TATTTTGGGGTACTTTTCAGAAT
3' ss Score
5.39
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCCTGAAAGTAACTGCTACTTCCCGGACTTGCACCACATGAAGTATGAGGTTGAAGGTGGCACTGGACCTAACGGAAGAGACCTACGGTTTGGATTTGATCCCCTGGAATTCCCTGAGTTTAGCTGGAGAGGATATGTCCCAATGACCTCTGTGCAG
Seq A exon
AATGAAGTAAAGGTAAGACTGACCGTGAGGAAGTCAAGCCTCTCCTTATTCCGGATTATTCTGAGGTACATCAATCCTGGAATGGAAGAAGTATCCGGCCGTATCACTGTTTACTCATCCAGGGGGAAGTCAG
Seq C2 exon
ATGCCTCTCAAAGCAAAGAGATCACCTTTCCCCCGAGTAAAGAGCCAGCCTTCGTCACGGTCCCGGGAAATGGCTTTGCAGATCCATTCTCCATCACACCAGGAACATGGATTGCTTGTATCCAGGTGGAAGGAGTCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'23-22,'23-21,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(26.7=22.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGTGGCACTGGACCTAA
R:
GGACTCCTTCCACCTGGATACA
Band lengths:
244-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]