MmuEX6000328 @ mm9
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12612229-12618333:+
Coord C1 exon
chr18:12612229-12612385
Coord A exon
chr18:12615219-12615351
Coord C2 exon
chr18:12618191-12618333
Length
133 bp
Sequences
Splice sites
3' ss Seq
TATTTTGGGGTACTTTTCAGAAT
3' ss Score
5.39
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GCCTGAAAATAACTACTACTTCCCGGATTTGCACCACATGAAGTATGAGGTCGAAGATGGCACTGGACCTAATGGAAGAAACCTGCGGTTTGGATTTGATCCCCTGGTATTCCCTGAGTTTAGCTGGAGAGGATATGCTCCAATGACCTCAGTCCAG
Seq A exon
AATGAAGTAAGGGTGAGATTGTCTGTGAGGCAGTCCAGCCTCTCCTTGTTCCGCATCGTTCTGAGATACATCAGTCCTGGAACGGAAGCCATATCCGGCCGAATCACTCTTTACTCATCGCAGGGAGATTCGG
Seq C2 exon
ATGCTTTGCAAAGCAGAAAAATCACCTTTCCCCCGAGTAAAGAGCCAGCCTTTGTCACAGTCCCTGGGAATGGCTTTGCAGGCCCATTCTCCATCACACCTGGGACGTGGATTGCTTGCATCCAGGTGGAAGGAGTCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(29.8=26.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCCCGGATTTGCACCAC
R:
CAGGTGTGATGGAGAATGGGC
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: