GgaEX0022057 @ galGal3
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106326665-106328597:+
Coord C1 exon
chr2:106326665-106326765
Coord A exon
chr2:106326956-106327088
Coord C2 exon
chr2:106328455-106328597
Length
133 bp
Sequences
Splice sites
3' ss Seq
TATTAACTTCCATTTTTCAGAAT
3' ss Score
8.48
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCTCTTCCACCTAGTCCTTCGCTATGTCAACCTGGGTTCAAAAAGCTCTAAAGGAAAGATTTCAGTTGCTGAGGGAAAACATTTTGGCACTAATTATACTT
Seq A exon
AATGAAGTGAGGATAACTTTGAATGTGGAAAAATCAAACCTCTACTTATTTTGCATTATCCTGAGATATATTAACCCTGGAAGTGAATCATTATCTGGCCGCATATCTGCTTGTCAAACTCGGCCTGAAACAG
Seq C2 exon
GTGCTGCTCAGAGCAAAGAGTTTGTCTTCCCACCCAGCAAGGAGCCAGCTTTTGTCACGATCCCAGGAAAAAACTCCACAGAGCCTTTCTCACTGGTTTCAGGAACATGGACTGTCAGTATAGTAGCAGAAGATGTCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'21-23,'21-22,22-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCACCTAGTCCTTCGCT
R:
CAAGAGGACATCTTCTGCTACT
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]