GgaEX0022056 @ galGal3
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106323615-106327088:+
Coord C1 exon
chr2:106323615-106323774
Coord A exon
chr2:106326627-106326765
Coord C2 exon
chr2:106326956-106327088
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTATTTTTCCCAGCCA
3' ss Score
7.51
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
AAGACCTGAGAAAAACTACTTTTTCCCTGATCTGCACCACATGAAGTTTGAGATTGAAGATGGTACAACAGTCAAGGGAAAGGAAATTCGGTTTGGCTATGATCCTGAGGAATTTCCTAGCTTCAGTTGGAGAGGATATGCCCGGATGTCCTCTATACAA
Seq A exon
CCAGAGGTGGTTGTGACTGTCACTGTGGCTTCCCCTAAGCTCTTCCACCTAGTCCTTCGCTATGTCAACCTGGGTTCAAAAAGCTCTAAAGGAAAGATTTCAGTTGCTGAGGGAAAACATTTTGGCACTAATTATACTT
Seq C2 exon
AATGAAGTGAGGATAACTTTGAATGTGGAAAAATCAAACCTCTACTTATTTTGCATTATCCTGAGATATATTAACCCTGGAAGTGAATCATTATCTGGCCGCATATCTGCTTGTCAAACTCGGCCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'20-22,'20-21,21-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(28.3=24.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGATCTGCACCACATGA
R:
CAAGCAGATATGCGGCCAGAT
Band lengths:
250-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]